treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.

Version: 1.0.2
Depends: ape (≥ 5.0), limSolve (≥ 1.5.5.0)
Suggests: lubridate, ggplot2, foreach, iterators, mgcv, knitr, rmarkdown
Published: 2025-09-03
DOI: 10.32614/CRAN.package.treedater
Author: Erik Volz [aut, cre]
Maintainer: Erik Volz <erik.volz at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: README
CRAN checks: treedater results

Documentation:

Reference manual: treedater.html , treedater.pdf
Vignettes: H3N2 (source, R code)

Downloads:

Package source: treedater_1.0.2.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): treedater_1.0.2.tgz, r-oldrel (x86_64): treedater_1.0.2.tgz
Old sources: treedater archive

Linking:

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