RapidoPGS: A Fast and Light Package to Compute Polygenic Risk Scores
Quickly computes polygenic scores from GWAS summary statistics of either case-control or quantitative traits without parameter tuning. Reales,G., Vigorito, E., Kelemen,M., Wallace,C. (2021) <doi:10.1101/2020.07.24.220392> "RápidoPGS: A rapid polygenic score calculator for summary GWAS data without a test dataset".
| Version: | 2.3.1 |
| Depends: | R (≥ 4.3), data.table, RCurl, curl, magrittr |
| Imports: | dplyr (≥ 1.1.3), GenomicRanges (≥ 1.52.0), IRanges (≥ 2.34.1), bigsnpr (≥ 1.12.2), coloc (≥ 5.2.3), bigreadr (≥ 0.2.5) |
| Suggests: | knitr, rmarkdown |
| Published: | 2025-02-19 |
| DOI: | 10.32614/CRAN.package.RapidoPGS |
| Author: | Guillermo Reales 
[aut, cre],
Chris Wallace
[aut],
Olly Burren [ctb] |
| Maintainer: | Guillermo Reales <gr440 at cam.ac.uk> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | RapidoPGS citation info |
| Materials: | README, NEWS |
| CRAN checks: | RapidoPGS results [issues need fixing before 2025-11-03] |
Documentation:
| Reference manual: | RapidoPGS.html , RapidoPGS.pdf |
| Vignettes: |
Computing a PGS using RápidoPGS-multi (source, R code) Computing a PGS using RápidoPGS-single and GWAS catalog (source, R code) |
Downloads:
| Package source: | RapidoPGS_2.3.1.tar.gz |
| Windows binaries: | r-devel: RapidoPGS_2.3.1.zip, r-release: RapidoPGS_2.3.1.zip, r-oldrel: RapidoPGS_2.3.1.zip |
| macOS binaries: | r-release (arm64): RapidoPGS_2.3.1.tgz, r-oldrel (arm64): RapidoPGS_2.3.1.tgz, r-release (x86_64): RapidoPGS_2.3.1.tgz, r-oldrel (x86_64): RapidoPGS_2.3.1.tgz |
| Old sources: | RapidoPGS archive |
Linking:
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