Last updated on 2026-01-22 03:50:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 41.15 | 810.76 | 851.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.74 | 514.43 | 539.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 63.00 | 1301.41 | 1364.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 59.00 | 1153.46 | 1212.46 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 585.00 | 622.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.49 | 732.84 | 786.33 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 32.24 | 740.46 | 772.70 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 543.00 | 580.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 752.00 | 777.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 52.00 | 686.00 | 738.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-22 12:10:18.062116: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.062387: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.065627: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.071761: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.08474: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.084871: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.087263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.093297: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.101067: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.101266: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.105978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.120677: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.121089: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.127855: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.12802: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.132655: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.14769: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.148077: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.168657: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.1688: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.173364: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.207224: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.215661: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.215843: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.224485: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.301829: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.303049: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.336942: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.337089: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.339665: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.345855: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.354357: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.354567: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.359355: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.37412: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.380356: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.414426: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.414564: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.416838: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.422946: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.435296: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.435491: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.440115: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.454926: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.455336: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.475195: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.475338: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.478064: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.484238: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.496757: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.496944: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.501502: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.516359: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.516764: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.53951: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.539682: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.542135: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.54841: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.561787: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.562029: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.566692: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.581957: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.582523: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.601528: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.60168: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.604221: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.610466: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.62243: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.622625: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.627187: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.642099: embedding
> test_pipeop_isomap.R: 2026-01-22 12:10:18.642516: DONE
> test_pipeop_isomap.R: 2026-01-22 12:10:18.663897: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.664031: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.666223: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.67274: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.700165: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.700283: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.702367: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.708547: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 12:10:18.715252: Isomap START
> test_pipeop_isomap.R: 2026-01-22 12:10:18.715416: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 12:10:18.717949: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 12:10:18.724141: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [319s/433s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-21 20:10:40.273788: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:40.274344: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:40.294611: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:40.342748: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:40.442589: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:40.442887: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:40.468687: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:40.517071: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:40.555759: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:40.573262: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:40.603052: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:40.722178: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:40.723322: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:40.777161: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:40.777468: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:40.815363: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:40.95313: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:40.954284: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:41.131638: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:41.131954: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:41.161603: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:41.469362: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:41.551431: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:41.551861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:41.638601: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:42.182253: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:42.220034: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:42.514573: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:42.514857: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:42.541875: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:42.577242: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:42.64408: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:42.644517: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:42.675369: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:42.810775: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:42.811877: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:43.105712: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:43.106016: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:43.127752: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:43.17507: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:43.259201: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:43.259667: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:43.298869: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:43.393695: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:43.405989: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:43.582872: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:43.584195: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:43.591034: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:43.652998: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:43.74448: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:43.744902: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:43.789376: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:43.891958: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:43.893078: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:44.103612: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:44.10391: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:44.132573: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:44.189011: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:44.307251: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:44.307686: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:44.341982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:44.460896: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:44.462126: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:44.646036: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:44.646327: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:44.680588: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:44.72449: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:44.845319: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 20:10:44.845745: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:44.876928: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:44.992877: embedding
> test_pipeop_isomap.R: 2026-01-21 20:10:44.99406: DONE
> test_pipeop_isomap.R: 2026-01-21 20:10:45.225495: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:45.22622: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:45.233865: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:45.285913: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:45.461864: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:45.462146: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:45.488373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:45.540459: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 20:10:45.572283: Isomap START
> test_pipeop_isomap.R: 2026-01-21 20:10:45.572581: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 20:10:45.603578: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 20:10:45.662986: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [301s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-19 10:20:27.838534: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:27.839509: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:27.856128: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:27.88005: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:27.958594: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:27.959254: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:27.986736: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:28.009387: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:28.053824: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:28.054757: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:28.073217: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:28.10909: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:28.111074: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:28.154853: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:28.155538: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:28.177328: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:28.227642: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:28.229566: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:28.402539: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:28.403045: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:28.417618: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:28.530639: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:28.583618: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:28.584525: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:29.232242: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:29.449279: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:29.453309: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:29.660972: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:29.661558: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:29.669922: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:29.687335: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:29.7453: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:29.746284: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:29.769661: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:29.820397: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:29.822402: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:30.036241: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.036724: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.046506: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.065501: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:30.148426: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.149117: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.177533: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.212302: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:30.213491: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:30.301078: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.301535: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.308223: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.330631: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:30.409232: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.410237: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.42995: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.480458: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:30.482513: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:30.612677: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.613458: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.626466: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.655051: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:30.725397: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.726526: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.749835: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.785104: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:30.786851: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:30.905862: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:30.906518: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:30.935734: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:30.958421: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:31.03301: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-19 10:20:31.033976: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:31.055022: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:31.101401: embedding
> test_pipeop_isomap.R: 2026-01-19 10:20:31.103051: DONE
> test_pipeop_isomap.R: 2026-01-19 10:20:31.221524: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:31.222162: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:31.233779: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:31.255582: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:31.377731: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:31.378406: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:31.390411: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:31.411944: Classical Scaling
> test_pipeop_isomap.R: 2026-01-19 10:20:31.448615: Isomap START
> test_pipeop_isomap.R: 2026-01-19 10:20:31.449263: constructing knn graph
> test_pipeop_isomap.R: 2026-01-19 10:20:31.461099: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-19 10:20:31.484509: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.5223047')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64