Last updated on 2025-05-02 03:51:13 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.5 | 84.36 | 103.09 | 187.45 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.1.5 | 57.88 | 74.22 | 132.10 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.1.5 | 330.84 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.5 | 331.17 | NOTE | |||
| r-devel-windows-x86_64 | 2.1.5 | 97.00 | 156.00 | 253.00 | NOTE | |
| r-patched-linux-x86_64 | 2.1.5 | 84.13 | 94.73 | 178.86 | NOTE | |
| r-release-linux-x86_64 | NOTE | |||||
| r-release-macos-arm64 | 2.1.5 | 136.00 | NOTE | |||
| r-release-macos-x86_64 | 2.1.5 | 194.00 | NOTE | |||
| r-release-windows-x86_64 | 2.1.5 | 96.00 | 172.00 | 268.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.1.5 | 84.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.1.5 | 107.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.1.5 | 108.00 | 187.00 | 295.00 | NOTE |
Version: 2.1.5
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘fast.Rmd’ using rmarkdown
--- finished re-building ‘fast.Rmd’
--- re-building ‘vcf.Rmd’ using rmarkdown
Quitting from vcf.Rmd:68-71 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "CollapsedVCF" object: superclass "ExpData" not defined in the environment of the object's class
---
Backtrace:
▆
1. ├─VariantAnnotation::readVcf(file = uit_file)
2. └─VariantAnnotation::readVcf(file = uit_file)
3. └─VariantAnnotation (local) .local(file, genome = genome, param = param, ...)
4. └─VariantAnnotation:::.readVcf(...)
5. └─VariantAnnotation:::.scanVcfToVCF(...)
6. └─VariantAnnotation::VCF(...)
7. └─methods::new(...)
8. ├─methods::initialize(value, ...)
9. └─methods::initialize(value, ...)
10. └─methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vcf.Rmd' failed with diagnostics:
invalid class "CollapsedVCF" object: superclass "ExpData" not defined in the environment of the object's class
--- failed re-building ‘vcf.Rmd’
SUMMARY: processing the following file failed:
‘vcf.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.5
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
libs 5.0Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64