Last updated on 2025-05-02 03:51:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 66.02 | 424.49 | 490.51 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 44.32 | 306.43 | 350.75 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 822.49 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 759.04 | NOTE | |||
| r-devel-windows-x86_64 | 0.1.0 | 68.00 | 357.00 | 425.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 60.11 | 391.32 | 451.43 | OK | |
| r-release-linux-x86_64 | OK | |||||
| r-release-macos-arm64 | 0.1.0 | 275.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 378.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 68.00 | 362.00 | 430.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | 245.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 349.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 85.00 | 472.00 | 557.00 | OK |
Version: 0.1.0
Check: examples
Result: NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGPCP 8.366 1.604 13.332
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘snpStats’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘gpcp-Ex.R’ failed
The error most likely occurred in:
> ### Name: runGPCP
> ### Title: Genomic Prediction of Cross Performance This function performs
> ### genomic prediction of cross performance using genotype and phenotype
> ### data.
> ### Aliases: runGPCP
>
> ### ** Examples
>
> # Load phenotype data from CSV
> phenotypeFile <- read.csv(system.file("extdata", "phenotypeFile.csv", package = "gpcp"))
> genotypeFile <- system.file("extdata", "genotypeFile_Chr9and11.vcf", package = "gpcp")
> finalcrosses <- runGPCP(
+ phenotypeFile = phenotypeFile,
+ genotypeFile = genotypeFile,
+ genotypes = "Accession",
+ traits = "YIELD,DMC",
+ weights = c(3, 1),
+ userFixed = "LOC,REP",
+ Ploidy = 2,
+ NCrosses = 150
+ )
READING VARIANT FILE
Error in validObject(.Object) :
invalid class “CollapsedVCF” object: superclass "ExpData" not defined in the environment of the object's class
Calls: runGPCP ... VCF -> new -> initialize -> initialize -> validObject
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang