CRAN Package Check Results for Package filearray

Last updated on 2025-09-15 03:50:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 64.45 98.75 163.20 OK
r-devel-linux-x86_64-debian-gcc 0.2.0 47.33 68.26 115.59 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.0 279.43 OK
r-devel-linux-x86_64-fedora-gcc 0.2.0 285.57 OK
r-devel-windows-x86_64 0.2.0 83.00 130.00 213.00 OK
r-patched-linux-x86_64 0.2.0 67.11 92.78 159.89 OK
r-release-linux-x86_64 0.2.0 65.52 93.27 158.79 OK
r-release-macos-arm64 0.2.0 75.00 OK
r-release-macos-x86_64 0.2.0 193.00 OK
r-release-windows-x86_64 0.2.0 82.00 130.00 212.00 OK
r-oldrel-macos-arm64 0.2.0 123.00 OK
r-oldrel-macos-x86_64 0.2.0 182.00 OK
r-oldrel-windows-x86_64 0.2.0 83.00 159.00 242.00 OK

Check Details

Version: 0.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [29s/46s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(filearray) R CMD check mode. Using 2 threads. > > # Sys.setenv("FILEARRAY_SKIP_COLLAPSE" = "TRUE") > > cat(utils::capture.output({ + print(Sys.getenv()) + }), sep = "\n", file = stderr()) BIBINPUTS .:.:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bib::/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bib: BSTINPUTS .:.:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bst::/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/bibtex/bst: DISPLAY :137 EDITOR vi FILEARRAY_NUM_THREADS 2 GITHUB_PAT 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 HOME /home/hornik LANG C.UTF-8 LANGUAGE C LC_COLLATE C LD_LIBRARY_PATH /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server LN_S ln -s LOGNAME hornik MAILTO Kurt.Hornik@wu.ac.at MAKE make MAKEFLAGS MAKELEVEL 1 MAKE_TMPDIR /tmp MFLAGS -k -j84 --jobserver-auth=fifo:/tmp/GMfifo2683847 OLDPWD /home/hornik/tmp/R.check/r-devel-gcc/Work OMPI_MCA_btl_base_warn_component_unused 0 OMP_NUM_THREADS 3 OMP_THREAD_LIMIT 3 OPENBLAS_NUM_THREADS 1 PAGER /usr/bin/less PATH /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/filearray.Rcheck/R_check_bin:/home/hornik/bin:/usr/local/bin:/usr/bin:/bin PIP_DISABLE_PIP_VERSION_CHECK true PIP_NO_CACHE_DIR false PIP_NO_USER 1 PIP_NO_WARN_SCRIPT_LOCATION false PIP_REQUIRE_VIRTUALENV true POCL_KERNEL_CACHE 0 PWD /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/filearray.Rcheck/tests RCPP_PARALLEL_NUM_THREADS 4 RETICULATE_MINICONDA_PATH /tmp/check-CRAN-regular-hornik/data/R/reticulate/miniconda RETICULATE_VIRTUALENV_ROOT /tmp/check-CRAN-regular-hornik/.virtualenvs R_ARCH R_BATCH R_BROWSER false R_BZIPCMD /usr/bin/bzip2 R_CMD /home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rcmd R_DEFAULT_PACKAGES R_DOC_DIR /home/hornik/tmp/R.check/r-devel-gcc/Work/build/doc R_ENVIRON R_ENVIRON_USER R_GC_MEM_GROW 2 R_GZIPCMD /usr/bin/gzip R_HOME /home/hornik/tmp/R.check/r-devel-gcc/Work/build R_INCLUDE_DIR /home/hornik/tmp/R.check/r-devel-gcc/Work/build/include R_INSTALL_TAR tar R_KNITR_OPTIONS knitr.chunk.optipng="-quiet" R_LIBS /tmp/Rtmp5xfREK/RLIBS_114faa69ec328c R_LIBS_SITE NULL R_LIBS_USER NULL R_MAKEVARS_USER /home/hornik/.R/Makevars-gcc R_OSTYPE unix R_PAPERSIZE a4 R_PAPERSIZE_USER a4 R_PARALLEL_PORT random R_PDFVIEWER false R_PLATFORM x86_64-pc-linux-gnu R_PRINTCMD lpr R_PROFILE R_PROFILE_USER R_RD4PDF times,inconsolata,hyper R_SESSION_TMPDIR /tmp/RtmpPQ2f7I R_SHARE_DIR /home/hornik/tmp/R.check/r-devel-gcc/Work/build/share R_STRIP_SHARED_LIB strip --strip-unneeded R_STRIP_STATIC_LIB strip --strip-debug R_TESTS startup.Rs R_TEXI2DVICMD /usr/bin/texi2dvi R_UNZIPCMD /usr/bin/unzip R_USER_CACHE_DIR /tmp/check-CRAN-regular-hornik/cache R_USER_CONFIG_DIR /tmp/check-CRAN-regular-hornik/config R_USER_DATA_DIR /tmp/check-CRAN-regular-hornik/data R_VERSION 4.6.0 R_ZIPCMD /usr/bin/zip SED /usr/bin/sed SHELL /bin/sh SHLVL 0 TAR /usr/bin/tar TEXINPUTS .:.:/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex::/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex: XAUTHORITY /tmp/xvfb-run.tKlMXT/Xauthority _CHECK_CRAN_REGULAR_FLAVOR_ r-devel-gcc _CHECK_CRAN_REGULAR_LIBRARY_DIR_ /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages _CHECK_CRAN_REGULAR_REPOSITORIES_ CRAN=file:///srv/R/Repositories/CRAN;BioCsoft=file:///srv/R/Repositories/Bioconductor/3.21/bioc;BioCann=file:///srv/R/Repositories/Bioconductor/3.21/data/annotation;BioCexp=file:///srv/R/Repositories/Bioconductor/3.21/data/experiment _R_CALLS_INVALID_NUMERIC_VERSION_ true _R_CHECK_ALWAYS_LOG_VIGNETTE_OUTPUT_ true _R_CHECK_AUTOCONF_ true _R_CHECK_BASHISMS_ true _R_CHECK_BASHISMS_EXTRA_ true _R_CHECK_BOGUS_RETURN_ true _R_CHECK_BROWSER_NONINTERACTIVE_ true _R_CHECK_CODETOOLS_PROFILE_ suppressPartialMatchArgs=false _R_CHECK_CODE_ASSIGN_TO_GLOBALENV_ true _R_CHECK_CODE_ATTACH_ true _R_CHECK_CODE_DATA_INTO_GLOBALENV_ true _R_CHECK_CODE_USAGE_VIA_NAMESPACES_ true _R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_ true _R_CHECK_COMPILATION_FLAGS_ true _R_CHECK_CRAN_INCOMING_ true _R_CHECK_CRAN_INCOMING_CHECK_FILE_URIS_ true _R_CHECK_CRAN_INCOMING_CHECK_URLS_IN_PARALLEL_ true _R_CHECK_CRAN_INCOMING_DROP_SUBMISSION_ONLY_ true _R_CHECK_CRAN_INCOMING_SKIP_DATES_ true _R_CHECK_CRAN_INCOMING_SKIP_URL_CHECKS_IF_REMOTE_ true _R_CHECK_CRAN_INCOMING_SKIP_VERSIONS_ true _R_CHECK_DATALIST_ true _R_CHECK_DEPENDS_ONLY_DATA_ true _R_CHECK_DEPRECATED_DEFUNCT_ true _R_CHECK_DOC_SIZES2_ true _R_CHECK_DOTCODE_RETVAL_ true _R_CHECK_DOT_FIRSTLIB_ true _R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_EXECUTABLES_EXCLUSIONS_ false _R_CHECK_FORCE_SUGGESTS_ false _R_CHECK_FUTURE_FILE_TIMESTAMPS_ true _R_CHECK_FUTURE_FILE_TIMESTAMPS_LEEWAY_ 6h _R_CHECK_INSTALL_DEPENDS_ true _R_CHECK_INSTALL_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_INTERNALS2_ 1 _R_CHECK_LENGTH_1_CONDITION_ package:_R_CHECK_PACKAGE_NAME_,verbose _R_CHECK_LICENSE_ TRUE _R_CHECK_LIMIT_CORES_ true _R_CHECK_LOG_USE_INFO_ true _R_CHECK_MATRIX_DATA_ true _R_CHECK_MBCS_CONVERSION_FAILURE_ true _R_CHECK_NO_RECOMMENDED_ true _R_CHECK_NO_STOP_ON_TEST_ERROR_ true _R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_ true _R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_ true _R_CHECK_PACKAGES_USED_IN_DEMO_ true _R_CHECK_PACKAGES_USED_IN_TESTS_USE_SUBDIRS_ true _R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_ true _R_CHECK_PACKAGE_NAME_ filearray _R_CHECK_PKG_SIZES_ false _R_CHECK_PRAGMAS_ true _R_CHECK_RD_CONTENTS_KEYWORDS_ true _R_CHECK_RD_LINE_WIDTHS_ true _R_CHECK_RD_MATH_RENDERING_ true _R_CHECK_RD_NOTE_LOST_BRACES_ true _R_CHECK_RD_VALIDATE_RD2HTML_ true _R_CHECK_RD_VALIDATE_RD2HTML_IGNORE_EMPTY_SPANS_ false _R_CHECK_REPLACING_IMPORTS_ true _R_CHECK_R_DEPENDS_ true _R_CHECK_R_ON_PATH_ true _R_CHECK_SCREEN_DEVICE_ stop _R_CHECK_SERIALIZATION_ true _R_CHECK_SHLIB_OPENMP_FLAGS_ true _R_CHECK_SRC_MINUS_W_IMPLICIT_ true _R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS_ true _R_CHECK_SUGGESTS_ONLY_ true _R_CHECK_SUPPRESS_RANDR_MESSAGE_ true _R_CHECK_SYSTEM_CLOCK_ false _R_CHECK_TESTS_NLINES_ 0 _R_CHECK_TEST_TIMING_ yes _R_CHECK_TEST_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_THINGS_IN_CHECK_DIR_ true _R_CHECK_THINGS_IN_TEMP_DIR_EXCLUDE_ ^(ompi|pmix-gds-shmem|pulse|runtime-) _R_CHECK_TIMINGS_ 0 _R_CHECK_TOPLEVEL_FILES_ true _R_CHECK_VALIDATE_UTF8_ true _R_CHECK_VC_DIRS_ true _R_CHECK_VIGNETTES_NLINES_ 10000 _R_CHECK_VIGNETTES_SKIP_RUN_MAYBE_ true _R_CHECK_VIGNETTE_TIMING_ yes _R_CHECK_VIGNETTE_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_VIGNETTE_TITLES_ true _R_CHECK_XREFS_NOTE_MISSING_PACKAGE_ANCHORS_ true _R_CHECK_XREFS_USE_ALIASES_FROM_CRAN_ true _R_GC_FAIL_ON_ERROR_ true _R_SHLIB_BUILD_OBJECTS_SYMBOL_TABLES_ true __R_CHECK_DOC_FILES_NOTE_IF_ALL_INTERNAL__ TRUE > > test_check("filearray") [ FAIL 2 | WARN 0 | SKIP 3 | PASS 928 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • On CRAN (3): 'test-collapse.R:85:5', 'test-collapse.R:196:5', 'test-collapse.R:308:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-methods_simple.R:42:17'): Simple operators ─────────────────── Operator `log10` on complex should fail, but did not throw the expected error. Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-methods_simple.R:23:5 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_error(...) at test-methods_simple.R:42:17 ── Failure ('test-methods_simple.R:42:17'): Simple operators ─────────────────── Operator `log2` on complex should fail, but did not throw the expected error. Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-methods_simple.R:23:5 2. │ └─base::withCallingHandlers(...) 3. └─testthat::expect_error(...) at test-methods_simple.R:42:17 [ FAIL 2 | WARN 0 | SKIP 3 | PASS 928 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc