Last updated on 2025-11-15 03:50:09 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.3.0 | 92.02 | 91.98 | 184.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0.0 | 78.75 | 90.71 | 169.46 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0.0 | 24.00 | 182.96 | 206.96 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0.0 | 32.00 | 199.51 | 231.51 | OK | |
| r-devel-windows-x86_64 | 0.8.3.0 | 112.00 | 127.00 | 239.00 | OK | |
| r-patched-linux-x86_64 | 0.8.3.0 | 103.81 | 79.91 | 183.72 | OK | |
| r-release-linux-x86_64 | 0.8.3.0 | 102.12 | 81.27 | 183.39 | OK | |
| r-release-macos-arm64 | 0.10.0.0 | 53.00 | 100.00 | 153.00 | OK | |
| r-release-macos-x86_64 | 0.10.0.0 | 79.00 | 172.00 | 251.00 | OK | |
| r-release-windows-x86_64 | 0.8.3.0 | 100.00 | 127.00 | 227.00 | OK | |
| r-oldrel-macos-arm64 | 0.8.3.0 | 53.00 | 60.00 | 113.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.10.0.0 | 76.00 | 151.00 | 227.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.8.3.0 | 110.00 | 152.00 | 262.00 | NOTE |
Version: 0.10.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [21s/31s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("epiworldR")
+ }
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests _________________________________________________________________________
Running the model...
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test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
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test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
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test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 3 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
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test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
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test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
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test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
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test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 8 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
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test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.8s<1b>[0m
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
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test-diffnet.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
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test-diffnet.R................ 9 tests <1b>[0;32mOK<1b>[0m
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test-diffnet.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-get.R.................... 0 tests
test-get.R.................... 0 tests
test-get.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m10ms<1b>[0m
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
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test-lfmcmc.R................. 0 tests
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test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
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test-measles-quarantine-errors.R 0 tests
test-measles-quarantine-errors.R 1 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 3 tests <1b>[0;32mOK<1b>[0m
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test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
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test-measles-quarantine-errors.R 15 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 16 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 17 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 18 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 19 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 20 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 21 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 22 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 23 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 24 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 25 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 26 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 27 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 28 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 29 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 30 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 31 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 32 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 33 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 34 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 35 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 36 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 37 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 38 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 39 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m37ms<1b>[0m
test-measles-quarantine-math.R 0 tests Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
test-measles-quarantine-math.R 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.4s<1b>[0m
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixing.R.......... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 89.00ms
Last run speed : 10.11 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- (IGNORED) Vax improved recovery : 0.8000
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - - - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible - - - - - - - - - - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 7 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.4s<1b>[0m
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine.R 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Risk-based Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 82.00ms
Last run speed : 10.93 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Detection rate quarantine : 0.5000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period high : 21.0000
- Quarantine period low : 7.0000
- Quarantine period medium : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - 0.00 - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible 0.09 - - - - - - - 0.91 - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
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test-measlesmixingriskquarantine.R 0 tests
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test-measlesmixingriskquarantine.R 0 tests
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test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 8 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 9 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 10 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 11 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 12 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 13 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 14 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 15 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 16 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 17 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 18 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 19 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 20 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 21 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 22 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 23 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 24 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 25 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 26 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 8 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 9 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 10 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 11 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 13 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 14 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 15 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 16 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 17 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 20 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 21 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 22 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 23 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 24 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 26 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 27 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 28 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 29 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 30 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 33 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 34 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 35 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 36 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 37 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 38 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 39 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 40 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 41 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m72ms<1b>[0m
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 3 tests <1b>[0;31m1 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 5 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 6 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 7 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 8 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 9 tests <1b>[0;31m2 fails<1b>[0m <1b>[0;36m65ms<1b>[0m
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests _________________________________________________________________________
|Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-multiple.R............... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.7s<1b>[0m
test-seir.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 19 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 20 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 21 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 22 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 23 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 24 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 25 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 12 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 13 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 14 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 15 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 16 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 17 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m9ms<1b>[0m
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 5 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 6 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 7 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 8 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 9 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 10 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 11 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 12 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 13 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 14 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 15 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m10ms<1b>[0m
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 16 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 17 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 19 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m15ms<1b>[0m
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests _________________________________________________________________________
Running the model...
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test-seirmixing.R............. 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Susceptible-Exposed-Infected-Removed (SEIR) with Mixing
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 45.00ms
Last run speed : 19.66 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
Distribution of the population at time 100:
- (0) Susceptible : 8999 -> 6000
- (1) Exposed : 1 -> 0
- (2) Infected : 0 -> 0
- (3) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - -
- Exposed - - 1.00 -
- Infected - - 0.90 0.10
- Recovered - - - 1.00
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m71ms<1b>[0m
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests _________________________________________________________________________
Running the model...
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test-seirmixingquarantine.R... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : SEIR with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 34.00ms
Last run speed : 26.16 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Contact tracing days prior : 3.0000
- Contact tracing success rate : 0.7000
- Days undetected : 3.0000
- Hospitalization period : 7.0000
- Hospitalization rate : 0.0500
- Isolation period : 7.0000
- Isolation willingness : 0.5000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.8000
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 6000
- ( 1) Exposed : 1 -> 0
- ( 2) Infected : 0 -> 0
- ( 3) Isolated : 0 -> 0
- ( 4) Detected Hospitalized : 0 -> 0
- ( 5) Quarantined Susceptible : 0 -> 0
- ( 6) Quarantined Exposed : 0 -> 0
- ( 7) Isolated Recovered : 0 -> 0
- ( 8) Hospitalized : 0 -> 0
- ( 9) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - 0.00 - - -
- Exposed - - 0.92 0.08 - - - - - -
- Infected - - 0.73 0.11 0.02 - - 0.01 0.03 0.09
- Isolated - - 0.15 0.71 0.04 - - 0.08 0.01 0.02
- Detected Hospitalized - - - - 0.86 - - - - 0.14
- Quarantined Susceptible - - - - - - - - - -
- Quarantined Exposed - - - 1.00 - - - - - -
- Isolated Recovered - - - - - - - 0.72 - 0.28
- Hospitalized - - - - - - - - 0.85 0.15
- Recovered - - - - - - - - - 1.00
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
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test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 16 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 17 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 18 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m58ms<1b>[0m
test-sir.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 8 tests <1b>[0;32mOK<1b>[0m
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test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
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test-sir.R.................... 18 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 19 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.9s<1b>[0m
test-sirconn.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 13 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 14 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 15 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 16 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 17 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-sird.R................... 1 tests <1b>[0;32mOK<1b>[0m
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test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
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test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
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test-sird.R................... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m30ms<1b>[0m
test-sirdconn.R............... 0 tests
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test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
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test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
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test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
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test-sirdconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
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test-sirdconn.R............... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m10ms<1b>[0m
test-sirlogit.R............... 0 tests
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test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
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test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
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test-sirmixing.R.............. 0 tests
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test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
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test-sis.R.................... 1 tests <1b>[0;32mOK<1b>[0m
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test-virus.R.................. 1 tests <1b>[0;32mOK<1b>[0m
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test-virus.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 4 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m
----- FAILED[xcpt]: test-model-methods.R<19--22>
call| expect_message(md_with_output <- draw_mermaid(model, output_file = "mermaid_diagram.txt"),
call| --> "Diagram written")
diff| No message was emitted
diff| Found 0 message(s), 0 warning(s), and 1 error(s):
diff|
diff| ERR: Could not open the file mermaid_diagram.txt for writing.
----- FAILED[data]: test-model-methods.R<25--25>
call| expect_true(file.exists("mermaid_diagram.txt"))
diff| Expected TRUE, got FALSE
Error: 2 out of 511 tests failed
In addition: Warning message:
In file.remove("mermaid_diagram.txt") :
cannot remove file 'mermaid_diagram.txt', reason 'Read-only file system'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.8.3.0
Check: installed package size
Result: NOTE
installed size is 19.6Mb
sub-directories of 1Mb or more:
doc 1.9Mb
libs 15.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 0.10.0.0
Check: installed package size
Result: NOTE
installed size is 22.5Mb
sub-directories of 1Mb or more:
doc 1.9Mb
help 1.3Mb
libs 17.9Mb
Flavor: r-oldrel-macos-x86_64