e6efb6827e8b25aeed95d10d954a45a0 *DESCRIPTION
2fba6f85926074e725ff465c6bdae1c0 *NAMESPACE
115016550ab3cd03710b5feba2a84f9c *NEWS.md
a9e1b44d97d4f79b4dae9390e02860af *R/createDF.R
a79f5f3035f398ba2717d4ac6c19c818 *R/data.R
05bdd7a3535e32fc7cfa408ef1d50fae *R/filterProteins.R
5cbb3c78f7b781e05b5674fa0fbc36fa *R/findDE.R
0b5751522e02ee3030939e2cea5239c6 *R/handleNA.R
62564d05752580e3b7e2b9932ce0c574 *R/handleTechReps.R
6f3b425d8bbb22659e610ab0af912443 *R/imputeFunctions.R
53b667a7244d890f1e9ccbf4afa4916c *R/modelPlots.R
776c80cd6476f7c7147b17e676a7be78 *R/modelProteins.R
75fa17eb754909b2490673f44def01af *R/normalize.R
88bd0d423afe81e3b425067bb5ed8158 *R/utils.R
c477b676dff2ff75eaa1a5e371639f70 *README.md
068ead9c489461cce474dc973d4732d1 *build/vignette.rds
9888e0073be095045efe24ccdd2dbb9d *data/covid_fit_df.rda
d59fc812130667175b1376b81fc7b798 *data/covid_norm_df.rda
43369902cbe7c834c09c037faec7555d *data/ecoli_fit_df.rda
f12b103bb98d5e1d2856e07e1e3a5bb9 *data/ecoli_norm_df.rda
5ca63bb2dd0a47ad0842261eacd494bc *inst/CITATION
7ac4f88c12a99a2dae7b6a9c9f2f3772 *inst/doc/intro_to_promor.R
9cb3e0a6cdf754ef67838c8a085f2957 *inst/doc/intro_to_promor.Rmd
75850cae3fafff7f2d79061a82355552 *inst/doc/intro_to_promor.html
0d2e70e37d52db86ddee40876998d5b2 *man/aver_techreps.Rd
8ba694a0e81d2b973b2569cc1ec98456 *man/corr_plot.Rd
9768cef1db129ab57919cb9d8cb92ed6 *man/covid_fit_df.Rd
765732b19e5003b326464840c581be6c *man/covid_norm_df.Rd
c7a630f6075f9b46aa380932a3962088 *man/create_df.Rd
768cccc7ab64548649db3b8aa4e4797a *man/ecoli_fit_df.Rd
6a2e85137436dd8171a4a17352a1133b *man/ecoli_norm_df.Rd
f28c40767937754bb4bf37066161c902 *man/feature_plot.Rd
665f4cc6b0687550503ac64cdbb153ec *man/figures/README-rocplot-1.png
6ae1566d8053d8b5f21e00ed882e1d5c *man/figures/README-volcanoplot-1.png
45a1d3c54d565e8b6d0320ae67fa59e0 *man/figures/README-volcanoplot-2.png
6f37ff34f407a7d46c4a6f5f9de3633e *man/figures/logo.png
58de15263045ad409eb409b5ec6dbcf8 *man/figures/promor_ProtAnalysisFlowChart_small.png
1291922169925353c98f8dfb544c96b7 *man/figures/promor_ProtAnalysis_notechreps_small.png
9ec3bbb09f1e5a909054439a6d0bf207 *man/figures/promor_ProtAnalysis_techreps_small.png
a7037a8803eae65058f19f09e63c3aff *man/figures/promor_ProtModelingFlowChart_small.png
20f8710da5af9ba7c6c0d6b9515e931c *man/filterbygroup_na.Rd
544fb14c5f84e3e6f593ab8bd939ab29 *man/find_dep.Rd
6d1a7a4728485da12b069be440dfca7e *man/heatmap_de.Rd
85b082e3f8bcdd062f831667fdf6239e *man/heatmap_na.Rd
f9fac28380dced51788fc0a7598bc904 *man/impute_na.Rd
422a877e9673e5bff6b0aa4c7c98dfc8 *man/impute_plot.Rd
199bf40e950275d8c1ab84f29031a00a *man/norm_plot.Rd
ebe509d287f1b0ba80c5a605c5547337 *man/normalize_data.Rd
a889d4f34b0efb5764478157648e0084 *man/onegroup_only.Rd
77f8c69ae31d61faeebf60825fef9abd *man/performance_plot.Rd
0ca8a42d09780893a61d85e5b5aa2e93 *man/pre_process.Rd
9ec3d69fcd509f75b9825d993d54327c *man/rem_feature.Rd
047b984bb6b0a01376633f269c6505e1 *man/rem_sample.Rd
7e7f82d8036d86edb0696301ee48a4da *man/roc_plot.Rd
3909a99734bf1b81ac7cb1b0c839fa07 *man/split_data.Rd
0c6f143df57585ec0248b9036cc63e6b *man/test_models.Rd
f1be125b46499ea3c4947b8c46261a90 *man/train_models.Rd
a32d12e820c38d1815eaa4b160790970 *man/varimp_plot.Rd
b56edb973439674c1b01159858d487eb *man/volcano_plot.Rd
0f6f93df30e63b92616678c29e47a6bd *tests/testthat.R
7a01e27895e56e78062ca64fe5a0e27e *tests/testthat/test-protein_analysis.R
f7510fabb8c701542add534f4cb6b723 *tests/testthat/test-protein_modeling.R
5f17521b2819507b4ee27e2bba01da70 *tests/testthat/testdata/fake_fit.RDS
867dfb47aa17464a54e48e852026b6bd *tests/testthat/testdata/fake_fit_df.rds
104fdc5be7b31c718d37b92ea4e649e5 *tests/testthat/testdata/test_expdesign.txt
282600174fc38164c4cbf5fd32bc8868 *tests/testthat/testdata/test_expdesign_tr.txt
9e896e5a356c7d980a051cedf2d77a98 *tests/testthat/testdata/test_model_list.RDS
8621b3fba8308033e607f5a3fb3d526e *tests/testthat/testdata/test_protgroups.txt
0d50e19291ab78d3c1d1314d6b6f4e37 *tests/testthat/testdata/test_protgroups_tr.txt
9cb3e0a6cdf754ef67838c8a085f2957 *vignettes/intro_to_promor.Rmd
c1e0e106d94caf5a7510cbc7fbbbf9bd *vignettes/promor_for_modeling.R
23175415d133c557ce310e72685326f9 *vignettes/promor_no_techreps.R
a539759bbf8ccf8cf2fb01d1bd26d671 *vignettes/promor_with_techreps.R
