7af68b0cee21031873afb7ff0d83d075 *DESCRIPTION
04ec244478963f648baf5262813eb4c3 *NAMESPACE
2b1ae403bba1e06ba75575c3fc48646b *NEWS
a750b8bf42c88d336ba9a067b3bfb8a2 *R/HMMplot.R
0a7e5e0dfa9bfa0791cd058f25161f51 *R/RcppExports.R
e94464c57756be216d421cea02b2939b *R/SSPlotter.R
165a02f81c29866de258f8e32e010ec9 *R/biofam3c.R
4f857fa590fe048c832a1244b906860b *R/build_hmm.R
e9890b40b9403b70e352f0b37a01649b *R/build_lcm.R
bab2447579909bc98c36d3c4bf871b7b *R/build_mhmm.R
d70aef4909166d8ea8122b433cc15395 *R/build_mm.R
52cf9a1fe95f1f9cfa544452af530c5f *R/build_mmm.R
bc2a7546fdf4619e0655ae6926e2f577 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
8b2c921c5c083c689c650cf97b0f2a83 *R/estimate_coef.R
11c6cb01e7252cd7e887b82c05cd1a89 *R/fit_model.R
77d4f3b6bfce8a721c926b971c9c6fb8 *R/forwardBackward.R
1fa18a37cc6f824f726ae1ee465b8f92 *R/gridplot.R
934d14564f23f13ab0d254472fc943cf *R/help_data.R
38c2ff380aed5029a23c4f54e8327e4c *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
496c8ac7809e2bac50d5a43cf376288e *R/import_seqdef.R
707cca9dfdea084fb6902fb026c1c5cb *R/isColor.R
a70385523cf2a6428faaba87240849d3 *R/logLik.hmm.R
f6d6e1ddb72f66ac43fd7a1d3c119a43 *R/logLik.mhmm.R
a024a2564faa04452e983e2995d088c6 *R/mHMMplotgrid.R
afb9d838a6d3a84a30a06215db5fc5fe *R/mHMMplotint.R
982436a14dae3c5dfc1b6be0b2d1b473 *R/mc_to_sc.R
360c359f97d4f3bb0bf02e02676eccb1 *R/mc_to_sc_data.R
f678fdd2298abadf0ef822e95f1ba3cb *R/mhmm_biofam.R
d3982e5832836ccf9c5cc1fbc22f96db *R/mhmm_mvad.R
3187e2baf5d4b73dac1cc6f7ebb7f621 *R/mssplot.R
9e7bfbc33088ae0338414d489aa09426 *R/plot.hmm.R
fca2de08ac8bccd48e863d612c64a9b6 *R/plot.igraph2.R
281352471ed39c98bad40f49730becc2 *R/plot.mhmm.R
5e6374a1342f6af76df63a5edb080818 *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
fb9f500a00e88cc3a430f3821affbf4e *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
b132037d5958d8f623d81b9eb56250d5 *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
b82cf5aa674ba16dc46d2b5430f8968a *R/seqHMM-package.R
f3c09851e5256bb46561267738ddb941 *R/simulate_hmm.R
d3116b04509e559e8eccf0d141d2f1e7 *R/simulate_mhmm.R
18794c287dc840452d948e9ae372c225 *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
642009c86fae47454f653a325dbd08a6 *R/ssp.R
e2b1218aea2376e5ef6bfea2502c53de *R/ssplot.R
c809babc827ff52593867c74ea3b675f *R/ssplotM.R
9436feabbdcc5d2a701449aa8c68ac77 *R/summary.mhmm.R
0a8f8d4c287368444e0ac6bb418bed01 *R/trim_hmm.R
98c7d35e8dbd692cb5a44e6c324435e6 *R/vcov.mhmm.R
e2037531b8674a5de0918e9fc6d3a53a *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
c6a7c0d5c12946e5a033a6638d0d8d3d *inst/doc/seqHMM.R
f760bb621448f2a583a245b1d6dccb34 *inst/doc/seqHMM.Rnw
ad3a1cfae1d890a5bfe144d83f1a7baa *inst/doc/seqHMM.pdf
46f75d7481bc6baa52cf536690b4d2ea *man/TraMineR_imports.Rd
187140c556b30977a608670cdf71b320 *man/biofam3c.Rd
4b8e18c16d21d7393444c4217bcf674c *man/build_hmm.Rd
bbf0acb1ef3f927380ae59355a2c9bfc *man/build_lcm.Rd
4c4cda43f91eacb19e8c72cecbbe38e2 *man/build_mhmm.Rd
a55db728fbb4564ac87f0ad014839706 *man/build_mm.Rd
ac30e68c831a50261576953cd2556452 *man/build_mmm.Rd
321643be78d0f4f598010a69f22611d7 *man/colorpalette.Rd
d1128740e238212f7dbd6b9ec93ad072 *man/estimate_coef.Rd
ea74ee2df10c0c186b36961f55fa880c *man/fit_model.Rd
f046ea626bfa0253cbfac25d3fbb4461 *man/forward_backward.Rd
11c42ef24729fd89c634decf678608d4 *man/gridplot.Rd
ca2080d544a43e12e66d9f654bdd1f95 *man/hidden_paths.Rd
4982eeeac5024b1dbc2ee51e49ec8e84 *man/hmm_biofam.Rd
a186c1abea107a303df9cf7b2ba11ceb *man/hmm_mvad.Rd
b25389ef3421da5f2161135084b31727 *man/logLik.hmm.Rd
ec9c7463c6dfff4b610adae762ff691b *man/logLik.mhmm.Rd
16b2cb060f7dd7d120895c6c0120eb8d *man/mc_to_sc.Rd
8b2cdec35795d95635dd5925b683ef9f *man/mc_to_sc_data.Rd
ccf48b076136f0880900587aa9d99805 *man/mhmm_biofam.Rd
1fc598a72b7600dbdb57844e8831838b *man/mhmm_mvad.Rd
8aa6c800edfffb7c33a487813b0f2695 *man/mssplot.Rd
e202933d2cff86b14bf37900562ff6b8 *man/plot.hmm.Rd
ea53603dc67d6ecab94a3fbec638f07f *man/plot.mhmm.Rd
757a8f5b1efbbf7c2251e3eeeff981b7 *man/plot.ssp.Rd
01aa3787f0ec26b4b044d64efedffe22 *man/plot_colors.Rd
88e5f89388a7b822a2d5c8e6a0cddc00 *man/posterior_probs.Rd
520c81a9020a80d611a723c12def971c *man/print.Rd
45f835b43cb6e7391582dc0cd23bb775 *man/separate_mhmm.Rd
3ce655052bbbeb37ed6f0abac45464d0 *man/seqHMM-deprecated.Rd
1028fa28dde1fb299a7fbf3c23028163 *man/seqHMM.Rd
186392d4c42a99a83dc5dfeaf9a777fb *man/simulate_hmm.Rd
e4eec1711e28f090c1db2161a2bbc6f9 *man/simulate_mhmm.Rd
a098eecd11d8395f4b332fe79b661cc0 *man/simulate_pars.Rd
b38683ea662d8e12fd74da4a6662c288 *man/ssp.Rd
38bfcbd1cd2a583c422412da283743e1 *man/ssplot.Rd
9f2455176e8461ea346d2c235e2cef00 *man/summary.mhmm.Rd
61ff9eeaea1450828ec5be1b6146273a *man/trim_model.Rd
490dc1c0fbbfbe7aad8d01bd385d2807 *man/vcov.mhmm.Rd
4e3c3956c6dc7ce8b865d5b7d97b4409 *src/EM.cpp
77dc0f97eb932e0c75ab099cd4e79ec4 *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
7e0a5ef2c95ef0b2d93f5bfeb1dea1d4 *src/RcppExports.cpp
44df2ced8da2a762ea46820bfd124464 *src/forwardbackward.cpp
52bf2a197ce83dee4a82d8fd28ecb483 *src/forwardbackwardx.cpp
70c4395a6c77093bfd170c48fedf74c9 *src/internalBackward.cpp
d61f37817720fc7ef7df4c5528d9e45f *src/internalForward.cpp
20f3ec5e3dde567bac17f9977054dae1 *src/logLikHMM.cpp
c94cf0dc45872a10683f779b28c7b6b8 *src/logLikMixHMM.cpp
cbf4ec71da0260198978ae733d540e39 *src/logSumExp.cpp
bcdaa44e843beebffe3a5b30a06cbbf0 *src/log_EM.cpp
6d6001cf7ffefe6a3910c8e0fe1a59fe *src/log_EMx.cpp
2a3b1c0aa3bb03375fb71cb31873485c *src/log_forwardbackward.cpp
7484eef25e449cbfc2c24d546a433337 *src/log_forwardbackwardx.cpp
11b2b44def61bd95df450a9a03daad1c *src/log_internalBackward.cpp
d079511214231aac9779510f445e305c *src/log_internalForward.cpp
e407e8af5bc166dd936840ee2450b6f3 *src/log_logLikHMM.cpp
9cc85fcbe3c78cf0f4729be0823bdf2f *src/log_logLikMixHMM.cpp
6d7c9def69d689dc95d7aae4fa2cb579 *src/log_objective.cpp
7e9db9b2e3c2fba92125464ed46f2cfd *src/log_objectivex.cpp
e16d14fb13797a2ce1eb6ffb57618135 *src/log_optCoef.cpp
c5a8072de5591b1c4a54b56f92e8b9bb *src/objective.cpp
ec4fe581740cf8823362f1a772f9656b *src/objectivex.cpp
a7cdc45d5803a68be5b6e01ef1ba43f3 *src/optCoef.cpp
91f652aeab5b3fe03459362efe089849 *src/reparma.cpp
cd391f4de027fe5773be537c09fe3200 *src/sa_opt_coef.cpp
99276459047a0cca57d9c887caa83d48 *src/seqHMM.h
0a8be09a2989d954d6986e42526a833e *src/uv_forwardbackward.cpp
a5904e80f3ac42dbd234d397b9edbe0c *src/varcoef.cpp
98b016e334f11e6b36a3d9979dfa5871 *src/viterbi.cpp
a82b654591200402d7ae60988c2a253b *src/viterbix.cpp
bd141d2b9f008e448ef63707231faaa0 *vignettes/references.bib
f760bb621448f2a583a245b1d6dccb34 *vignettes/seqHMM.Rnw
