72e0c27064940869a29189e4554e29de *DESCRIPTION
c8c19f0ac827def27fdb1c583f7f1678 *NAMESPACE
30e34813dc68dabb71113300a86d4463 *R/RcppExports.R
42f06b0b7bec117aec994c7342fc4112 *R/burnin-phybreak.R
f498fa50cfba954ab0ba5bff0dc3fc86 *R/get-current.R
db198d92ccd8d42a20b4d812747810af *R/infectorsets.R
81972881f277a97ae13bdde946f9ccf1 *R/logLik-phybreak.R
c10fb8df736d3dfd019388ec060f96ec *R/make-phyloclass.R
b0794a6bcebd100956ced818a14d61fd *R/mcmc-environment-functions.R
d99b871a880c0765daf32f88331b7866 *R/mcmc-updatehost-paths.R
8d2f941a2a02a07f67e630262366bf4a *R/mcmc-updateparameters.R
9e34aa4b1057426172a69a96be4da2fb *R/phybreak-class.R
0550d050db3503ca7a0ee95597fae72c *R/phybreak.R
da5f8d45d91f3caf136d5d8d23bce062 *R/phylotree.R
b0215c77c3545dacb3056787f359120f *R/plot-phybreak.R
ab50e56c37633a65e1ec67e01198ce85 *R/sample-minitrees.R
a86c435a12677bcf7e423d04300c800b *R/sample-phybreak.R
0a2f48c6321f3e429eebb202d9a9ff55 *R/sim-phybreak.R
4739a8736d59bafdc6bcd49536c4b8a1 *R/thin_phybreak.R
765e33161edc7ed33c30ffa1fdb6121b *R/transtree.R
c1c41428105c75082b2fa2f180bdcb28 *README.md
e721b3daf5f41ec995ea67c9ab2cd5b6 *inst/CITATION
06ab7dc8fd0a5a76f1820ab1c792ab47 *man/burnin.phybreak.Rd
93b70e75059f8d688fd22a2a27dde89a *man/get.phybreak.Rd
3e32bdfba9b4ad7a49d5468b20b54bc9 *man/infectorsets.Rd
2ad0c71eb72832b3952ee1e75d4500d6 *man/logLik.phybreak.Rd
4a00f34c3e92a8fde7c61dd69153df54 *man/phybreak.Rd
87fe2c6b1d0a296b8c58ffd9d35dd3ac *man/phylotree.Rd
4986c94a323feab444b7eee20724ec13 *man/plot.phybreak.Rd
0cbfdedaf6f4fa72448dd084fe9735df *man/sample.phybreak.Rd
a6630112ec42519382fe2438fbde59ae *man/sim.phybreak.Rd
c00467e097dadf0888bc6a1947165041 *man/thin.phybreak.Rd
9d767a9089deea65b2552ea0f60f7fe9 *man/transtree.Rd
fa997e3de470c121cbd8d7e9696ebf5e *src/CCphylo_support.cpp
efc114041bfbac6a48eb50c30c51fc86 *src/CCphylo_support.h
0677b5281e91be9f7699f0c5ad187f47 *src/CCphylotree.cpp
7c4084809ef633acf64b308d712576ea *src/CCtrans_support.cpp
c28224601dd5c84fba5c1a11f061b896 *src/CCtrans_support.h
00968a5ed71351b39c8bd7aed3f92194 *src/CCtranstree.cpp
762432fa3f4e2bbee41de35d2b85c7b2 *src/RcppExports.cpp
2ed9f077ad0fa634be5ed66b13a4ed68 *src/likseq.cpp
82f3b56c32ddb5ad7098510405337018 *src/likseqenv.cpp
eee62569b32f3bc1cba61447dec510bd *src/mcctree.cpp
482af539d69412d40100be86799f1fb7 *src/mtcctree.cpp
78b645e4ffe16953411f121c1a28f76c *src/ptr.cpp
56c15c8f7bf476a5c1fd955cd0498a97 *src/sctwh3.cpp
