This document describes use of the antaresRead package
with h5 file format.
To use h5 file format, you must install packages
zlibbioc and rhdf5 (>= 2.20.0) from
bioconductor. If your proxy allows it, you can use
:
With R < 3.5.0, use:
source("https://bioconductor.org/biocLite.R')
biocLite("rhdf5')With R >= 3.5.0 :
install.packages("BiocManager")
BiocManager::install("rhdf5")An other solution is to install manualy this two packages from zip file. They are available here : https://bioconductor.org/packages/release/bioc/html/zlibbioc.html http://bioconductor.org/packages/release/bioc/html/rhdf5.html
With h5 file, antaresRead will be running faster. Your
reading will take between 2 and 4 times less time. An
other avantage is the compression, a study can pass
from 15Go in txt to 2.5Go in h5.
Furthermore, a h5 transformation convert lot of txt file in a single h5
file, it will be easier to move it, a copy/paste of a
study with 137 thousand files (15Go) takes 45 minutes in txt and 30
seconds in h5.
Finally, you can use in the same way function of
antaresProcessing and antaresViz packages. You
can also use addProcessingH5 function to add columns to
your h5 file.
The function writeAntaresH5 is used to write h5 file
from antares output. You can add inputs data like in
readAntares.
setSimulationPath("study_path/output/simulation_name")
writeAntaresH5()setSimulationPath("study_path/output/simulation_name")
writeAntaresH5(misc = TRUE, thermalAvailabilities = TRUE,
hydroStorage = TRUE, hydroStorageMaxPower = TRUE, reserve = TRUE,
linkCapacity = TRUE, mustRun = TRUE, thermalModulation = TRUE,
writeAllSimulations = TRUE)
#with a shorcut
writeAntaresH5(allData = TRUE,
writeAllSimulations = TRUE)By default writeAntaresH5 returns an error if the
h5 file already exists. You can use
overwrite = TRUE.
setSimulationPath("study_path/output/simulation_name")
writeAntaresH5(overwrite = TRUE)setSimulationPath("study_path/output/simulation_name")
writeAntaresH5(nbCores = 5, writeAllSimulations = TRUE)You can use setSimulationPath and
readAntares in the same way than on normal study.
setSimulationPath("mySim.h5")
readAntares()
readAntares(areas = "all", links = "all")
readAntares(areas = "all", mcYears = "all")
readAntares(timeStep = "weekly")You can use function addProcessingH5 from
antaresProcessing package.
library(antaresProcessing)
opts <- setSimulationPath("mySim.h5")
addProcessingH5(opts = opts, mcY = "mcInd",
addDownwardMargin = TRUE,
evalAreas = list(Tota = "`H. STOR` + `MISC. DTG`",
Tota2 = "`NODU` + `NP COST` + 1")
)
For read data after adding addDownwardMargin, you
can use alias Out_addDownwardMargin, use
showAliases() to see them.
readAntares(mcYears = "all", select = c("Tota", "Tota2"))
readAntares(mcYears = "all", select = "Out_addDownwardMargin")
It’s possible to use opts from h5 with all
antaresViz modules.
library(antaresViz)
opts <- setSimulationPath("mySim.h5")
prodStack(opts)
plot(opts)
exchangesStack(opts)
#Run on more than one opts :
opts2 <- setSimulationPath("mySim2.h5")
plot(list(opts, opts2))