3babde7c6493d68a33fb213306f9890b *DESCRIPTION
f87058574a7a4943931f72c6e33077c3 *NAMESPACE
8001bf42d9b4b7457e34c52d041176df *R/DepLogoR.R
5908cb8ef2f18f49ae718ca7ce1064e1 *R/seqLogo.R
c118648ebe0a4244de76ac945904da26 *build/vignette.rds
d995abcbe342d4a03acf7b7841d426bf *inst/CITATION
10073f3bfc5f449408219794cab4698d *inst/doc/DepLogo.R
d3b7cda8226d9fec07a68be3f9f115b4 *inst/doc/DepLogo.Rmd
e2e276579ef7ef283692a48527396283 *inst/doc/DepLogo.html
cf1ad1f43ead6395d52ce7daac739e9c *inst/extdata/Glycos_trans_3N.ann
fa5ee4226b70e07120985c090ab7d3ae *inst/extdata/cjun.txt
78b00d1b6db74d1f541cd533a35ce7ff *inst/extdata/long_bak.txt
3bf2d3d58aaf4e48ad0d4a2aef2c7705 *inst/extdata/nrsf.txt
50e1d6d6f4ee9e4e1e9098aa54a1350a *inst/extdata/pwm_bak.txt
70e86fec552feab13b6611f755663fd2 *inst/extdata/wam2_bak.txt
7d69526b3b8d8e361544c8aac373aff9 *inst/extdata/wam_2deps.txt
7ab5e9fc1895b08fda9e06d93d93a528 *inst/extdata/wam_3deps.txt
e987916594da24196623666ed81858b2 *inst/extdata/wam_4deps.txt
d4bcbaad8cba15f5efe68cd102ac9f52 *inst/extdata/wam_5deps.txt
d84e0236b42f818f5821a2bca74fb08e *inst/extdata/wam_bak.txt
1a1de85eccb0dd3787e2d472a4b1b040 *man/Alphabet.Rd
29ef3a63a56cc8b8f3ad692b2ea05678 *man/DLData.Rd
d38da12ef78b59f1438f2e0fc68863e4 *man/alphabet.dna.Rd
b1c74cb150b39c0cf6242df203ca690f *man/alphabet.dna.gap.Rd
6135958bc82041c7e50b838e49e4ea69 *man/alphabet.protein.Rd
9eac3c7daa28977cc4f3d9f7db5075b4 *man/alphabet.protein.gap.Rd
55c9262253d12b17400af840f25a9e5e *man/alphabet.rna.Rd
195c6bef285f296edff5c5237751d477 *man/alphabet.rna.gap.Rd
2e8b238c5b470030095968516583ed01 *man/colorchart.Rd
0f7a1089b0f03b9ad124d6837043301f *man/deprects.Rd
56e120f1e2d7a3fc21dbcbaf720f2dc2 *man/filter.by.conservation.Rd
42dea180695801ae075d705f7596c505 *man/filter.by.dependencies.Rd
c1e72dd02aafb9afc525d0edfac88054 *man/filter.by.gaps.Rd
38f354a2877fb836d0a0a3644bca76fb *man/filterColumns.Rd
26d1ffedde5a2ac4b29556321c2ba243 *man/getDeps.Rd
08636d594bc9b96e015c0b5ebaaea4d3 *man/getPWM.Rd
c5b23e7a1f8144f75af50113e496d39c *man/logo.Rd
bc847c4d5b8b3ae9fc00b68fc13595bb *man/partition.Rd
0cbf96027d33c6376acc9652b6ac7fe1 *man/plotBlocks.Rd
025813d678ea41b2a276df4f6728130c *man/plotDeparcs.Rd
96b4d9e3e688afbb29ae4e381840a2a2 *man/plotDeplogo.Rd
bc0b2e88d0395efe175004a5f03ce5c7 *man/plotDepmatrix.Rd
03d583f65dfa8c81cbd666b1a0bfb7c0 *man/replaceColors.Rd
4a6afc3f673bc76de5dfb6916bf8e107 *man/revcom.Rd
1af2462441246015f3e9644dcb7706c2 *man/subBoxes.Rd
d04c7353401447a009f47b70c8c431b4 *man/subLines.Rd
baab4a0c32d1b0657c4e88d5ce187572 *man/suggestColors.Rd
3820c4448191c0d555d980f47c02ce30 *man/summary.DLData.Rd
196ac48d9c48eb94e73609e678febe5f *tests/testthat.R
c48e967d7207d7ced61b02cf337c4ecc *tests/testthat/Rplots.pdf
505eb5f556e754bc6feb5a8f4b68073e *tests/testthat/test-DLData.R
6eacf795f8c7ca4ed8091e5e21772fdb *tests/testthat/test-Dependencies.R
4c5479d9397185af9d47fe814efeaa60 *tests/testthat/test-Filter.R
09aa627fa522fb783bc4a5a14103aba7 *tests/testthat/test-Partitioning.R
9b9722dd22054b2be3995461cea6cd68 *tests/testthat/test-Plots.R
829af570ff24de394329cad571104436 *tests/testthat/test-Revcom.R
d3b7cda8226d9fec07a68be3f9f115b4 *vignettes/DepLogo.Rmd
9d8ac1f980ea8c3d944b0ade08ffea8d *vignettes/annotated_deplogo.png
60220e6756f54932386430cdfac28e34 *vignettes/references.bibtex
