870677981ad3dae059a2362e2819c7ef *DESCRIPTION
b991db1951fb867c58949418e5f4335c *NAMESPACE
b2a7d916017650e806f04c58903bdc9d *R/RcppExports.R
523cc8d4c32a7d3c0fe18b1533367934 *R/calc_K.R
56c7f8bf3c5ad87ec73585bba6a9ee58 *R/calculate_error.R
084ab97657c67cef97257f415c839419 *R/calculate_mat.R
32f7e08df1fd8f2d4051a13c68138330 *R/estimate_time.R
650d605db4d5e110b91970970e7ca6e7 *R/estimate_time_diploid.R
901a840761ce022e610d672034ea0ea9 *R/estimate_time_haploid.R
7c2602bfce56be5f8e3ce3a54629db55 *R/estimate_time_one_chrom.R
377d11886bdbf956d9349a413eb4cfa3 *R/log_likelihood_diploid.R
f8f765820d8ede1e5a1a0345e37b6153 *R/log_likelihood_haploid.R
3c9673a07b38b675096d5ff53f12b8fc *R/number_of_junctions.R
2b78558220471f871e51f7660fce8aff *R/number_of_junctions_backcross.R
cfdf0c10a1ff0e6f22cd52b0ca87a281 *R/number_of_junctions_di.R
336dbb6a31f658db7780512e40700b39 *R/number_of_junctions_markers.R
be82f914ca6e88abb15e6d83e06002e6 *R/sim_backcrossing.R
5db58d5d70f461f70b298cbe92726faa *R/sim_fin_chrom.R
62f6ff4536524b63d614b65d5e790133 *R/sim_inf_chrom.R
819ee1d1514a765f77d7a0a78e67590c *R/sim_phased_unphased.R
29072ed2c79000a55d50a08787ca573c *R/util.R
aaac95b815ad131da118e8efc49bcb4d *README.md
45edda7437e028dd7fde70bcc9c3e146 *build/vignette.rds
9f4c1c76bc7563f3721440b55b72dc71 *inst/doc/Overview_of_the_junctions_package.R
333a6aa2fb9ee378268fa1308cf3ea7e *inst/doc/Overview_of_the_junctions_package.Rmd
51e195e04260da662ffa16c8549130f6 *inst/doc/Overview_of_the_junctions_package.html
77b3e5310cda223ceb3799b0572b0ea5 *inst/doc/junctions_vignette.R
9df7b4bb32924c5d4b182dbb2c069e54 *inst/doc/junctions_vignette.Rmd
fdd34ad68642b8d51446a8e9cb5c009c *inst/doc/junctions_vignette.html
21188d9b63c89d4c20ec7064ac5c9169 *inst/doc/phased_and_unphased_data.R
776eb4f53940155f7acbf6497063dce2 *inst/doc/phased_and_unphased_data.Rmd
a8121c3b5b71be03e8113ef4eb9f3228 *inst/doc/phased_and_unphased_data.html
813d2d78f4bbf6a96c41ae88b989a7f5 *man/calc_k.Rd
13c9d8efa048a8ef826c79e9d0d19c2a *man/calculate_mat.Rd
3e021658636f8fe6fe270d4da906eb09 *man/estimate_time.Rd
821c05352a1047bb7bec79852d115295 *man/estimate_time_diploid.Rd
7901e2c1f80559cbd7401217b05c92b8 *man/estimate_time_haploid.Rd
5ad582a270823274e093866be9f2e397 *man/estimate_time_one_chrom.Rd
6035e47eb272eb9a5e3992701e6c6121 *man/junctions-package.Rd
5a0b5c8e71d17107e1a770592b1170e3 *man/log_likelihood_diploid.Rd
2143bede846e4947528c20c80d6b374a *man/log_likelihood_haploid.Rd
054c14c92c6729c2dd7c3f0f8c9e5290 *man/number_of_junctions.Rd
bcb202dc000b70f6fcf73c9c211954be *man/number_of_junctions_backcross.Rd
40d828a44f7c54f42770d53936218d68 *man/number_of_junctions_di.Rd
dd516c675a3315b301c97a5a59b956af *man/number_of_junctions_markers.Rd
1ee52613b6094567c7807e6f8fe86491 *man/sim_backcrossing.Rd
1c41177444a658fab16f34767c8e99ca *man/sim_fin_chrom.Rd
331b83960ce6bca4afc851e67d16a9ef *man/sim_inf_chrom.Rd
a94b5afcfe4e8a76da215c46fb6d094d *man/sim_phased_unphased.Rd
4c5753918aaac16743531597f50e66e4 *man/time_error.Rd
5ad68aec46a2a4f5048549afef60dc39 *src/Fish.cpp
361c0400359cbc8bec60d056a1822320 *src/Fish.h
4898b6111cc5d601006050e95dee9586 *src/Makevars
c956da317864d95f28851a642f9df740 *src/Makevars.win
a73aa729c8e263cbf40babac000d81bb *src/Output.cpp
e8ea567d085bb6ba64c53b6e826be4fd *src/Output.h
5bfcb957dbf341252d852164a97e1962 *src/RcppExports.cpp
ce66238ccd72e5a0991fbf3ab1e882de *src/backcrossing.cpp
f5ed1b535dfce03230414a55b355786e *src/estimate_time_unphased_cpp.cpp
1326d705104bcfc3cc5fa3cdc3179f60 *src/estimate_time_unphased_cpp.h
df866774ea8be55629aade42b1f37da5 *src/main_functions.cpp
2e284cc49054122173b341d02b28a1ff *src/random_functions.h
59f574831a698430f3526e8b8dc4aa92 *src/unphased.cpp
4d268dc5fa7ca05035425c8403f35f20 *tests/testthat.R
a9a3777000aeb0e32c615e5e22f59afd *tests/testthat/test-backcrossing.R
1846e203e64d69d0e6be8fe5bf1b00ac *tests/testthat/test-equations.R
31dc0306d6a58d1ed4147d14effa9313 *tests/testthat/test-estim_time_haploid.R
1f5a78c61a2d953bb1f3b23aa6cc7339 *tests/testthat/test-marker_dist.R
b415fb5f044de377dd380737442bb266 *tests/testthat/test-one-chrom.R
0fc48577ac9f00cf0ef5f1cae9592960 *tests/testthat/test-phased-error.R
6f3fa07248a251002e0cd2768011b5e5 *tests/testthat/test-phased.R
82045fa05ca7d23b64984f7922b17b02 *tests/testthat/test-sims.R
b8ef037466e856c0db7c346dd5e7fe63 *tests/testthat/test-unphased.R
333a6aa2fb9ee378268fa1308cf3ea7e *vignettes/Overview_of_the_junctions_package.Rmd
9df7b4bb32924c5d4b182dbb2c069e54 *vignettes/junctions_vignette.Rmd
776eb4f53940155f7acbf6497063dce2 *vignettes/phased_and_unphased_data.Rmd
