b969807e1e96880a2d06e2c93f7dcc23 *DESCRIPTION
8b5ec7cf3f1aad51ba2a06b5baca46f5 *NAMESPACE
ec98a7a8eca1a12fe7b6db759deb1d2f *NEWS.md
9a1aeacc03e677d7ae795a9cd26eb5ce *R/AllClasses.R
ed80af3a6fd8e8974ecd555e29daee8a *R/AllGenerics.R
137874660c1c66e18d0a22113668e42c *R/digitalDLSorteR.R
b9c141e0cddb779dced5876b7ef6fdb8 *R/dnnModel.R
92ae79aa2b9c49b0779fcdc10603ef63 *R/evalMetrics.R
8ce4e3147f9722ebaa80ec9b2b954c3b *R/loadData.R
82bccefe715a820d3b436d6ad1c98bd7 *R/simBulk.R
a21318f04c3856f3f8b80c731e60ac65 *R/simSingleCell.R
10bfd2d67a2e499a4ab276b7e5073e25 *R/utils.R
4598d461eef2d15471ed997a82b4946d *README.md
8faf250d78a120ba4c7ea2186efddd24 *build/partial.rdb
43b7a22d86cee1e5cf64daa68d9cebec *build/vignette.rds
ce730c7c116cdeac067216cb348a14e3 *inst/CITATION
ad035ed156cb3f577639db2da188e5dd *inst/doc/newModels.R
5bd349c13ef77669230870b9e97dedc6 *inst/doc/newModels.Rmd
1b8849a778db20bed22381fc4df1c902 *inst/doc/newModels.html
6bdd62a01bd4337fac7cba268ea941c8 *man/DigitalDLSorter-class.Rd
134cf4a94d7fafc053209f159ebf84db *man/DigitalDLSorterDNN-class.Rd
2075c1ae7c674453d536a842cb3f303f *man/ProbMatrixCellTypes-class.Rd
ecae8c07d904936dbe57db3010da9532 *man/ZinbParametersModel-class.Rd
ba5b56e2c81d4109ffde920d29a83eb2 *man/barErrorPlot.Rd
066a2771250d70f31fec30181f80d26f *man/barPlotCellTypes.Rd
4770f00c3591a125744f65136f72b210 *man/blandAltmanLehPlot.Rd
7627cf34e0ea0da1d7717677c7c96b65 *man/bulk.simul.Rd
87b4d6e849375caab51cf0514e5c9a4d *man/calculateEvalMetrics.Rd
3d4e8bae130f5cff71597fe0a6ffd14a *man/cell.names.Rd
c85906ab3a6a5552a9e11a5cf36f8d58 *man/cell.types.Rd
7a01a83550949062c3a4aea3e1cb0360 *man/corrExpPredPlot.Rd
5ea29d77fa5669fa6fea2140bcdd8a3c *man/createDDLSobject.Rd
c7002a48c39dd8c675de2665dce7495a *man/deconv.data.Rd
80d4e9e9a45c09b186c41d2ee163f611 *man/deconv.results.Rd
702c122856dcb5048734ca0b22ddbd94 *man/deconvDDLSObj.Rd
28fffcd030ca363fce5f5dc12dad0325 *man/deconvDigitalDLSorter.Rd
7fd59cd329d22305b2195c5d9c036824 *man/digitalDLSorteR.Rd
15306e4263233b481226d0b54fac2bb1 *man/distErrorPlot.Rd
ca647709c933eaef46811fb5ffb86eff *man/estimateZinbwaveParams.Rd
b345e9ed2ede8bf97169723532b6e7a3 *man/features.Rd
a79dfbadd8bce49a9365ab1c8fda6fcc *man/figures/logo.png
2b3cec7db38d8df7a799fda5f8cf85c5 *man/figures/summary.png
7acbf89f00f7304fc3d89441f4ebfe33 *man/figures/workflow_readme.png
e55de0b86bd769e647ddcbf3049cb233 *man/generateBulkCellMatrix.Rd
bb15f41836b3fec573bb8b9c60869c58 *man/getProbMatrix.Rd
10f4ca390805d8b8156b38456c5fccd1 *man/installTFpython.Rd
f61c5c07fec256f98a038a3a99422fc2 *man/listToDDLS.Rd
5fd2dbb5b4ce6bd8c7de43bf99abcd4b *man/listToDDLSDNN.Rd
26727fd75b23f7915b834cd3222ebf6d *man/loadDeconvData.Rd
41d72c356f6ee9ab08536d87741da060 *man/loadTrainedModelFromH5.Rd
74cadc73361e4f93d5f5f3f66c6eec4b *man/method.Rd
edd54db76b4c75a2eba62a14a343ef1d *man/model.Rd
287402b1861e0a8903630a2c4dc7d6ac *man/plotTrainingHistory.Rd
b2958922b565469d8eb989de8b7987bd *man/plots.Rd
78e6eaa96be1c2764a276ddab05f6252 *man/preparingToSave.Rd
9d83050bb8c866e0b38027d23598cd79 *man/prob.cell.types.Rd
6b2bef33e59c01193664bdcb535a08c3 *man/prob.matrix.Rd
2d2948d117ce7a2194b291ade3769962 *man/project.Rd
2334ca586282dee952928581c17512cc *man/saveRDS.Rd
b535430ba7198b9e3af230672e73aa7d *man/saveTrainedModelAsH5.Rd
3af7687beaeebaeacdebefdbfd6876a4 *man/set.Rd
c464499b0995e32b42ff746f8c11696a *man/set.list.Rd
7c359bd5163f8d5856de9f8f23d27efb *man/showProbPlot.Rd
768c096748ee47fe0ba0d150bf327b71 *man/simBulkProfiles.Rd
bfb1115936ffb6ce799f2432d4e952e6 *man/simSCProfiles.Rd
b6335d25e3e5e4e1c42fce8c49364322 *man/single.cell.real.Rd
e4a0e0ceb618dc2780ae0f0904e9a218 *man/single.cell.simul.Rd
363b013cbe8d0bb0b8aa089abd6057f6 *man/test.deconv.metrics.Rd
9010c9d80212f9d2c4a6d4b90a5a9589 *man/test.metrics.Rd
bb497ac097cab608101b14d2b9150575 *man/test.pred.Rd
16d3d44f7b91c84448f8597c8d70cf6d *man/trainDDLSModel.Rd
95f9f19c0737562b5acae95d7e535f05 *man/trained.model.Rd
d7b1425f7d1bf9b65cea3c9b581a0178 *man/training.history.Rd
5e97d7ae9fbd2f7049bd0c6438ee57a8 *man/zinb.params.Rd
467e0401be567a3494b591f61aa09d78 *man/zinbwave.model.Rd
141e8a933d2b6dc60ecf62bef5c4f1bc *tests/testdata/cellsMetadata.bad.tsv.gz
dcaf2cffadea1cfdde790e1a9d5fe495 *tests/testdata/cellsMetadata.tsv
7a705ad7e001eb3c4042a3adbc592c5a *tests/testdata/cellsMetadata.tsv.gz
c748ef889e9e4a3e27ca86e2c5af47a9 *tests/testdata/counts.bad.tsv.gz
df92895999daaf095d9dde43eda341b6 *tests/testdata/counts.tsv
8dc63489efba98ce229b9d49a936cbb3 *tests/testdata/counts.tsv.gz
4658b292788df82ed5b5dfb50bc2798f *tests/testdata/genesMetadata.bad.tsv.gz
37383878f18b84a3a985d2a2e93d36d6 *tests/testdata/genesMetadata.tsv
fed7ded8cf2e8e9a059fad13a3de4263 *tests/testdata/genesMetadata.tsv.gz
8a18f37692ab4cc82d344b1c1b3846f2 *tests/testdata/sparse_data/barcodes.tsv
eace0ee8510fe1a47cf67ac3300d47b5 *tests/testdata/sparse_data/genes.tsv
7c0895c05c1265ff6cc0f7fc79ebc155 *tests/testdata/sparse_data/matrix.mtx
07fecd52021399291e32328ec9995a54 *tests/testthat.R
5773e07cfbaffcc1197a99375963ef2a *tests/testthat/test_dnnModel.R
9a401ffb37fc2b54ff27fc098609677d *tests/testthat/test_evalMetrics.R
a07eb9585b85e093d9f8292cb8d7b480 *tests/testthat/test_loadData.R
660deb99d5460758cffe1a1c76bc550a *tests/testthat/test_simBulk.R
a96912abd6557335a1e89306d2114431 *tests/testthat/test_simSingleCell.R
56ed5bb8af9175cf7b31a0d5a5febc6d *tests/testthat/test_utils.R
5bd349c13ef77669230870b9e97dedc6 *vignettes/newModels.Rmd
0e0fbc194cbad480688dc4733e3ebe89 *vignettes/references.bib
