a182dcaada6171358da324d0ca8fe6a0 *DESCRIPTION
0dbed8995b28f5f2cc737d38bd158016 *NAMESPACE
f0d43a3a5b3ddacafff637d16b8cc551 *NEWS.md
08049e1f4a4edcf82ba437f124a8136b *R/PLN.R
b72f4577a2be88729bde7d70e7043bba *R/PLNLDA.R
93049ec4bcb5d56ee87ac58e4d17b2c9 *R/PLNLDAfit-S3methods.R
199414092f1464a4439cad2049422d38 *R/PLNLDAfit-class.R
e402cc9ecd3d9ebe1acd96fb6362bef4 *R/PLNPCA.R
ee50d15c5bf105b21774b631fb6bccb6 *R/PLNPCAfamily-S3methods.R
c62eb9c76f1a0fe4bafd76adf775fe25 *R/PLNPCAfamily-class.R
45e84f5dbc4209d73eee98046926cacb *R/PLNPCAfit-S3methods.R
5c67bea4545da961632d0d02613b3f14 *R/PLNPCAfit-class.R
d16bca864f4a6f1513f26bf1511e97bb *R/PLNfamily-S3methods.R
6295eb891b07170d1bf455733eb68f33 *R/PLNfamily-class.R
86762bf62cee58459c3941cc9957cb62 *R/PLNfit-S3methods.R
d2ebf51a6747b16fef606a11ab49d0eb *R/PLNfit-class.R
d4436ff5da6c6f978e5c1874340d18e4 *R/PLNmodels-package.R
3c5aa6585f7f1940b5e9325121abc6d2 *R/PLNnetwork.R
2820c7ed201e42eab8a177a9410b8c0b *R/PLNnetworkfamily-S3methods.R
0bcdb521780ed18b6c04897b3bf74b7e *R/PLNnetworkfamily-class.R
791cf3a11bd77bd4350f57112d87c091 *R/PLNnetworkfit-S3methods.R
e25c401c1d40ff0076d298cb1efb6514 *R/PLNnetworkfit-class.R
2fb6622a17211cae49104db87cf68d2d *R/RcppExports.R
9f178285ed4268ea6d4eacecb01aa70c *R/deprecated.R
2bcbb477ca487d0ea19193881b43b52d *R/import_utils.R
8daea67a03cefb6c7ff82853ccb3a537 *R/mollusk.R
e1b72de746dec3c89bbc5b2bda691029 *R/plot_utils.R
017a6c4e5b04c1a5ded023256007d997 *R/trichoptera.R
8d2487dbf45064f33b08e5a80830b68e *R/utils-pipe.R
6cc4ce9eb3ce2c8eeff587d161a24031 *R/utils.R
647f69fa714081306d5fd76d7f78e2f0 *build/vignette.rds
2f327773058c2bd66029ab7f7d7b5251 *data/mollusk.rda
d8fbc101f364e46b994254894974c26c *data/trichoptera.rda
7b30091f2dc61fee0fac97d3616ec4f5 *inst/CITATION
e5e863814024b1a1350589db89816cb8 *inst/doc/Import_data.R
ea77f64ddb4551f6aaf6640c14f94974 *inst/doc/Import_data.Rmd
addb6d117201ac947b88ee0b936044c4 *inst/doc/Import_data.html
d262de59083a294767f7c67bd7056542 *inst/doc/PLN.R
45006e4652b59e7a033c46b1de48442f *inst/doc/PLN.Rmd
5e1dc613de98c4d33a4f3fb659862262 *inst/doc/PLN.html
f86b780d09c5b9c22da0f57651342c9d *inst/doc/PLNLDA.R
e1154bb73e4248c0d0388d5b7dcd5cb3 *inst/doc/PLNLDA.Rmd
b8b7458909ce07f168aa8708540630b9 *inst/doc/PLNLDA.html
7d4078012dce8a912e0d144faa2ba876 *inst/doc/PLNPCA.R
e9d224660f4fbf875c1ea639bb744e85 *inst/doc/PLNPCA.Rmd
1921a6d4842e5cd1a00948eb94e8a76f *inst/doc/PLNPCA.html
c7147784f891edfa121db18b93012ba7 *inst/doc/PLNnetwork.R
d523acfa0dfeb4e95dc37b35df5ef62e *inst/doc/PLNnetwork.Rmd
90e8def2091e16093dd0a23e8ca68990 *inst/doc/PLNnetwork.html
de3d5ef1a9b7326a576f93aea154c2e1 *inst/doc/Trichoptera.R
de3ac93ba0a9226dc08f611817a1a177 *inst/doc/Trichoptera.Rmd
9d0f37999390c2a0aa97c88c09769f78 *inst/doc/Trichoptera.html
d796a3ec349e8c99c9404825c1d80d1d *man/PLN.Rd
8159c8321d043be8b0fab92e2b38375f *man/PLNLDA.Rd
8d1e1595eede49ae67ae4311cd700569 *man/PLNLDAfit.Rd
b87c55a2c6504bbd160637745655ba2e *man/PLNPCA.Rd
35d16d731f928293cf7fbfd43eeefec2 *man/PLNPCAfamily.Rd
589ca2679c42205010cb11ce68cd8fc4 *man/PLNPCAfit.Rd
b462a4e7f1782f91034350848d82641b *man/PLNfit.Rd
46d3a426cb3523b2c5cb63a68043d1d7 *man/PLNmodels.Rd
268e8df528b4ad4eba0a9e7f705720e6 *man/PLNnetwork.Rd
535c94b4278557ea440af0b944c20a47 *man/PLNnetworkfamily.Rd
1ade8dc2650afd8f80eddade134013be *man/PLNnetworkfit.Rd
cdb3abacafc7920ce05818ecad47d45f *man/coef.PLNLDAfit.Rd
0349a3dd1af1e3c2537204ff18408ebe *man/coef.PLNfit.Rd
2aec7f6085a87247d1845d16f801b314 *man/coefficient_path.Rd
a21ec4b6950cd6dc341b2795ddb9ee2a *man/compute_offset.Rd
d1f534c0d54c929b612b4d68cc564227 *man/extract_probs.Rd
ad4fab8aaac566822a2bdab83b802c20 *man/figures/PLN-1.png
e03b5a7338baa6f86571e76cb9107706 *man/figures/PLNLDA-1.png
5aff6b5ed17fb429333b7fa9fb287464 *man/figures/PLNPCA-1.png
311ccfc6ebcdd187952b5f02d6e5aec6 *man/figures/PLNPCA-2.png
ba876de895c7ef4127ff42abf2b33f6e *man/figures/PLNnetwork-1.png
2830cd399b9d2a5cbb83ca1bd18b0933 *man/figures/PLNnetwork-2.png
68946a1f9a3c9d200231229459aa6884 *man/figures/logo.png
bb38ad651644d63295a9462b0577478b *man/fisher.Rd
03c68b45a54622312b349618e2ecc55a *man/fitted.PLNfit.Rd
14e5753e13706137e4d0b0b9fb1fcf3b *man/getBestModel.Rd
39cf5678a07e48e72da6a696750013bc *man/getModel.Rd
c05c2010bbfc9a836530953408d36f04 *man/mollusk.Rd
1f7896a1b866ff9ae89ba35be7c7b6f1 *man/pipe.Rd
f75a1180b4d554ec5258684b4e110b91 *man/plot.PLNLDAfit.Rd
77db548a0b4565203915075ea585e553 *man/plot.PLNPCAfamily.Rd
e2fa9222fa5d07fc80b6be57aae58efc *man/plot.PLNPCAfit.Rd
92d322f7a2132d3b296fd9338fb8fbcd *man/plot.PLNnetworkfamily.Rd
d0d7e8cff97bd5245791effac91fcb61 *man/plot.PLNnetworkfit.Rd
1ff0e491b68403749984fb146a180d61 *man/predict.PLNLDAfit.Rd
3fb39025587f2a0c98acf17318eaab4b *man/predict.PLNfit.Rd
6c534f5bd09f0a9d21bf1f506f28a599 *man/prepare_data.Rd
8ba2df850cb2d2813935b4a7ab6b461d *man/prepare_data_from_biom.Rd
68173c904e5ec5f38898170e3280dc98 *man/prepare_data_from_phyloseq.Rd
b452140cac97f774392a78fdda21132f *man/rPLN.Rd
2472bb2b2e7221458ad65820a4e7b156 *man/sigma.PLNfit.Rd
67502d7f0e529d71c0596314578d7ca8 *man/stability_selection.Rd
b67f3552b9968fec96be473c23c068a0 *man/standard_error.Rd
1979abe45244f7b95fe50566536e9eb7 *man/trichoptera.Rd
d9605caa0f1091dc5147ecbba9d4fdd6 *man/vcov.PLNfit.Rd
2f76849e4ad5710181dd2360818b54c3 *src/Makevars
0d1d3af75e040aa1779739b9f60c182e *src/Makevars.win
5f34142efa1773101157a8adbc156830 *src/RcppExports.cpp
4179d8a91cb1c51f842d15804fe29029 *src/call_optimizers.cpp
657b8e3e9e31d484ff58be997a1b860e *src/data_struct.h
883ce3c411ee3c3cff98372a7e7137a1 *src/gradients.cpp
55d95dec6a027067b80754b2b5d1a1c3 *src/gradients.h
cb665d42c741bb439452714dd3cb40c0 *src/nlopt_utils.cpp
b4b99bcc94aefb8af3deb95c4f00256a *src/nlopt_utils.h
0ca9e83c4be08cfc34e85f615e83f0d3 *src/optimizers.cpp
49761781f7d89ac8463e3d03002c24ed *src/optimizers.h
18a23834805a479852c3ee8b39ab72be *tests/testthat.R
ef4230f0a5a7c07f6ba792d2587ed619 *tests/testthat/Rplots.pdf
0e09d629b88b4c9759e84f29bff3fb84 *tests/testthat/test-import-utils.R
8828636de67a4d47d12adbf80b2e4dfe *tests/testthat/test-pln.R
20f55ddb6c80fa0ba0100fad66318db0 *tests/testthat/test-plnfamily.R
bc6e113ff7ad2c3a7a3373c9301bb1bb *tests/testthat/test-plnfit.R
afaf92104801c145d19a9461e2491813 *tests/testthat/test-plnlda-fit.R
04c75eb467898efa891670d3153a5b7f *tests/testthat/test-plnlda.R
95ba44b3eaaf3b4701ad55e6760d051e *tests/testthat/test-plnnetworkfamily.R
0c18e4158d4b2209ddf94d1c6f76a674 *tests/testthat/test-plnnetworkfit.R
9db4192adf0a074dc0af043a90f9b67d *tests/testthat/test-plnpcafamily.R
2d3201ec0349c6ac6dbb7fc91f8b7a74 *tests/testthat/test-plnpcafit.R
7aeea072129d15709e46e0da7888262c *tests/testthat/test-standard-error.R
ea77f64ddb4551f6aaf6640c14f94974 *vignettes/Import_data.Rmd
45006e4652b59e7a033c46b1de48442f *vignettes/PLN.Rmd
e1154bb73e4248c0d0388d5b7dcd5cb3 *vignettes/PLNLDA.Rmd
e9d224660f4fbf875c1ea639bb744e85 *vignettes/PLNPCA.Rmd
d523acfa0dfeb4e95dc37b35df5ef62e *vignettes/PLNnetwork.Rmd
de3ac93ba0a9226dc08f611817a1a177 *vignettes/Trichoptera.Rmd
8b2a9409e414dbf162ead7604f2376db *vignettes/article/PLNreferences.bib
8f03f4dd93836ef21a7341b9fad0419b *vignettes/figures/macronema_zebratum.jpg
