a8c804a17009139e9a4bb39f090266bb *DESCRIPTION
d6b145dbba765751cd168b76f7da7186 *NAMESPACE
fc205037d47f6012b2685f16f1e8b138 *R/Script_DROPLET_01_CREATE_MARVEL_OBJECT.R
99f02216e60b3ea2058c0f379b9b0095 *R/Script_DROPLET_02_PREPROCESS_1_AnnotateGenes.R
29af73b733af99013fe023596b3d02b0 *R/Script_DROPLET_02_PREPROCESS_2_AnnotateSJ.R
46d075d36a27f25d46878f64e2ffa4d4 *R/Script_DROPLET_02_PREPROCESS_3_ValidateSJ.R
e747aafd312ec3a3b9075c916a880041 *R/Script_DROPLET_02_PREPROCESS_4_FilterGenes.R
3229a83947c324dfe3ddd99817ba374b *R/Script_DROPLET_02_PREPROCESS_5_CheckAlignment.R
313d2d285549b9963413aa09cdc55895 *R/Script_DROPLET_03_EXPLORE_EXPRESSION_1_Gene.R
b25417978e39da65208a2d7302f671f8 *R/Script_DROPLET_03_EXPLORE_EXPRESSION_2_SJ.R
7dcda7032119192299b57c43dcd024b7 *R/Script_DROPLET_04_DE_1_SJ.R
6c630120adc360d2dc64a044cc7be05f *R/Script_DROPLET_04_DE_2_Gene.R
007a0c19dfc7866c36d0a9e422df41e6 *R/Script_DROPLET_04_DE_3_VolcanoPlot_SJ.R
e4be8abba1f5749c2c341f318b534251 *R/Script_DROPLET_04_DE_4_VolcanoPlot_Gene.R
15686d9ce5319af32400207a8b76fc0e *R/Script_DROPLET_05_DE_5_IsoSwitch.R
6b8296145cb06cbcebfe62341a7cd2cb *R/Script_DROPLET_05_DE_6_1_GO.R
8e553c3c5b84b0f4220a154eb4f2b2b6 *R/Script_DROPLET_05_DE_6_2_GO_Plot.R
ca6bdc7db33024dcc3ab697d499e7764 *R/Script_DROPLET_07_ADHOC_PLOT_PCA_1_PlotFeatures.R
2c89587b1f4e26a8e178fc7c610e3056 *R/Script_DROPLET_07_ADHOC_PLOT_PCA_2_PlotValues_PSI.R
dbf90e05064a41ff84fc3836368c6a7f *R/Script_DROPLET_07_ADHOC_PLOT_PCA_3_PlotValues_Gene.R
b001474c5653c025ec21015d7dc25cad *R/Script_DROPLET_09_ADHOC_GENE_1_TabulateExpression_Gene.R
0abca429c6c997888276d5020dcb937d *R/Script_DROPLET_09_ADHOC_GENE_2_TabulateExpression_PSI.R
3a2a74a0398444a08919e33534ee2bc3 *R/Script_DROPLET_09_ADHOC_GENE_3_DE_Gene.R
848dec1d4eca995c4db1b9585f695b3b *R/Script_DROPLET_09_ADHOC_GENE_4_DE_PSI.R
120ed8a6e77711e437f77b5264509ba0 *R/Script_DROPLET_09_ADHOC_GENE_5_PlotDEValues.R
b23c4138e8e9cf213350a30f6bc04293 *R/Script_DROPLET_09_ADHOC_GENE_6_PlotSJPositions.R
09aa6f07b3c289bcaf0125a72e672bed *R/Script_PLATE_01_CREATE_MARVEL_OBJECT.R
021989ac5188a26a8cf10ddd097416d7 *R/Script_PLATE_02_DETECT_EVENTS_0.R
56fdf421bed3562e7b48829305e824df *R/Script_PLATE_02_DETECT_EVENTS_1_0_ALE.R
a365c28521f76d4d67b4fa51bf3520cb *R/Script_PLATE_02_DETECT_EVENTS_1_1_ALE_PosStrand.R
1045e42570961ef8a6628b6d17b4c68b *R/Script_PLATE_02_DETECT_EVENTS_1_2_ALE_NegStrand.R
20b15e6802e3a75ab79b00a34ed334e8 *R/Script_PLATE_02_DETECT_EVENTS_2_0_AFE.R
e83bc230266e1294259aa9dcf0607a21 *R/Script_PLATE_02_DETECT_EVENTS_2_1_AFE_PosStrand.R
e7c61dc578716060fe7d58aab579e01a *R/Script_PLATE_02_DETECT_EVENTS_2_2_AFE_NegStrand.R
078247ea784709bae547da7188b50c3c *R/Script_PLATE_03_COMPUTE_PSI_0_Compute.R
1c8cb57659e7d791b81c389772990e09 *R/Script_PLATE_03_COMPUTE_PSI_1_Compute_SE.R
c40e4be3837e9c225a0fbbeff47b1ef1 *R/Script_PLATE_03_COMPUTE_PSI_2_Compute_MXE.R
02b64e4cf87a70ff3383235fa47ee755 *R/Script_PLATE_03_COMPUTE_PSI_3_Compute_A5SS.R
6b50e3a950fadf739c3aafbdb373d8f6 *R/Script_PLATE_03_COMPUTE_PSI_4_Compute_A3SS.R
9c0ed6f208514eb913106dd451c90cdd *R/Script_PLATE_03_COMPUTE_PSI_5_Compute_RI.R
2791fcb62101a0ac6d7ded54c58cebba *R/Script_PLATE_03_COMPUTE_PSI_6_Compute_ALE.R
ff13bef0a3a6f7a51aaa4f7fceb31b57 *R/Script_PLATE_03_COMPUTE_PSI_7_Compute_AFE.R
a5989e588badc42cc1202f7dac99902f *R/Script_PLATE_04_PREPROCESS_2_SubsetSamples.R
406965f9cffd784ff7bfa0ef4236d452 *R/Script_PLATE_04_PREPROCESS_3_0_CheckAlignment.R
661000b39af959fdada94285c922c900 *R/Script_PLATE_04_PREPROCESS_3_1_CheckAlignment_PSI.R
ce806d1c08c9ce7c7c74bd91a80752c4 *R/Script_PLATE_04_PREPROCESS_3_2_CheckAlignment_Gene.R
6d7de2100272030174cc3c90b0816f75 *R/Script_PLATE_04_PREPROCESS_3_3_CheckAlignment_PSI_Gene.R
b2e74435673298f452a3ffae29acc2c5 *R/Script_PLATE_04_PREPROCESS_3_4_CheckAlignment_SJ.R
79c10533a4718e295e00ca319b825c15 *R/Script_PLATE_04_PREPROCESS_4_TransformGeneValues.R
ce8a4b6de4d1cf442cac6d31e28c23b6 *R/Script_PLATE_05_EVENTS_EXPRESSED.R
c170c6cb96657607ac04226e9d1711ef *R/Script_PLATE_06_MODALITY_ANALYSIS_1_AssignModality.R
cb8c7101c90ca0105c64ffe0aa5f8e66 *R/Script_PLATE_06_MODALITY_ANALYSIS_2_0_PropModality.R
1cafed87970c6516d01695ef366092e0 *R/Script_PLATE_06_MODALITY_ANALYSIS_2_1_PropModality_Doughnut.R
2da2a1f7a070cc035053fec352e74699 *R/Script_PLATE_06_MODALITY_ANALYSIS_2_2_PropModality_Bar.R
e98dc364e1cbcab0df4f75ea322cf129 *R/Script_PLATE_07_PCA_0_RunPCA.R
3ec15789693e107389dc1bc61f41681f *R/Script_PLATE_07_PCA_1_RunPCA_PSI.R
c3fab3555e28f04f14411ccb5a8a725a *R/Script_PLATE_07_PCA_2_RunPCA_Gene.R
a9f4fc2987fd65432d1cf50e0391457d *R/Script_PLATE_08_DE_1_0_CompareValues.R
60c8eb0675eb958c9222c39de01b2c92 *R/Script_PLATE_08_DE_1_2_CompareValues_PSI.R
9e443bacad86d18b61bf97da0e52c3ee *R/Script_PLATE_08_DE_1_3_CompareValues_Gene.R
bcf05a2d626c313a279db68291f90980 *R/Script_PLATE_08_DE_1_4_CompareValues_SplicedGene.R
25608270f47c25ff6030ff6d20c51dc9 *R/Script_PLATE_08_DE_1_5_SubsetCrypticA3SS.R
910672638c5eeb4fe2ac963d2ea666b6 *R/Script_PLATE_08_DE_2_0_PlotDEValues.R
aefcad721b3907ad71a5cdd698cd15ac *R/Script_PLATE_08_DE_2_1_PlotDEValues_PSI_Distance.R
1222f9b03e2ae5d921be543ead467f48 *R/Script_PLATE_08_DE_2_2_PlotDEValues_PSI_Mean.R
17518f863713bdc8257c57f2f6a75ec2 *R/Script_PLATE_08_DE_2_3_PlotDEValues_PSI_Mean_Group1vs2.R
1699e9ff8608cef436858c9eb35640e9 *R/Script_PLATE_08_DE_2_4_PlotDEValues_Gene_Mean_Global.R
6484506e61ddb4ea039d1cb3f0037cd3 *R/Script_PLATE_08_DE_2_5_PlotDEValues_Gene_Mean_Spliced.R
603f5bd7fbb14cefa9588e7124c9bfa0 *R/Script_PLATE_08_DE_3_PctASE.R
240a14688d98323c1813d0e95b85e189 *R/Script_PLATE_08_DE_4_ModalityChange.R
01122cae6075496e593897c6a24b7999 *R/Script_PLATE_08_DE_5_1_IsoSwitch.R
538160efd4002a525e50988db2aee509 *R/Script_PLATE_08_DE_5_2_IsoSwitch_PlotExpr.R
bb936aac23f1c4300c566adf63da9da9 *R/Script_PLATE_08_DE_6_1_GO.R
d374d892ab2137783a257a69a7360ff5 *R/Script_PLATE_08_DE_6_2_GO_Plot.R
acafa4ce1debff09333ab7cacfa99350 *R/Script_PLATE_09_PREDICT_NMD_1_ParseGTF.R
b2a9e2d0bcce3814adfa5d3fffe8c007 *R/Script_PLATE_09_PREDICT_NMD_2_0_FindPTC.R
1a43ac2cf4b18777b4720fa4b424607f *R/Script_PLATE_09_PREDICT_NMD_2_1_FindPTC_SE_PosStrand.R
db444dfc468fff848e805e3b2ea8531e *R/Script_PLATE_09_PREDICT_NMD_2_2_FindPTC_SE_NegStrand.R
b4785a43cb52b50ff6ba15987210b1d7 *R/Script_PLATE_09_PREDICT_NMD_3_1_FindPTC_RI_PosStrand.R
8853bb8e1161a9d7342d97b044e728fe *R/Script_PLATE_09_PREDICT_NMD_3_2_FindPTC_RI_NegStrand.R
7503c7a50884c6c77827d294db85800d *R/Script_PLATE_09_PREDICT_NMD_4_1_FindPTC_A5SS_PosStrand.R
e8c6bcb569e2596a82b6bf2342fe0c4c *R/Script_PLATE_09_PREDICT_NMD_4_2_FindPTC_A5SS_NegStrand.R
735196ece8c4956af1c025a1e04ef3d9 *R/Script_PLATE_09_PREDICT_NMD_5_1_FindPTC_A3SS_PosStrand.R
f405c2c9e010cd8fc9f3a771e801efd7 *R/Script_PLATE_09_PREDICT_NMD_5_2_FindPTC_A3SS_NegStrand.R
06388fa66cf778bb4e19a866f59a5d65 *R/Script_PLATE_09_PREDICT_NMD_6_PropPTC.R
532a735b71ce133aaf7f7aa4ea64b840 *R/Script_PLATE_09_PREDICT_NMD_7_CompareExpr.R
5adb0aa47916f6eeb7a5b7646bae64ed *R/Script_PLATE_09_PREDICT_NMD_8_AnnoVolcanoPlot.R
8c1409db6be025d7132c1706db1ecece *R/Script_PLATE_10_ADHOC_PLOT_0_PlotValues.R
56c77830665f01bb6ec4f6386622e4de *R/Script_PLATE_10_ADHOC_PLOT_1_PlotValues_PSI.R
3f45c5553733fb9243d338a12671e99f *R/Script_PLATE_10_ADHOC_PLOT_2_PlotValues_Gene.R
2d8becd5cfdf99359b039b79f0e3a3b5 *build/vignette.rds
3b93c1629b36c47298f8a8090cd458ec *inst/doc/MARVEL.R
bae58da71b760313754f7aedaadbac40 *inst/doc/MARVEL.Rmd
488cd819e2e967e61a5ca2d71a865c08 *inst/doc/MARVEL.html
a71a52e0f320322b2326a026b2ed7e6d *inst/extdata/data/marvel.demo.10x.raw.rds
0a3c7be2b40aae18fdba56b07b284ae8 *inst/extdata/data/marvel.demo.10x.rds
9c9cbb633fcb36031478d0815254f49c *inst/extdata/data/marvel.demo.rds
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1cd32bd91079beaa4ba3dfbad1a27af3 *inst/extdata/figures/DE.png
8a176743f271810e66c4e0aff57305d5 *inst/extdata/figures/Modality.png
b2800bd17da9f9ad331734ec7aded81d *inst/extdata/figures/PSI_Computation.png
56d06fa3bd872d3d753c4fb20f01b5a5 *inst/extdata/figures/PSI_Validation.png
c81231ae962e14f9cc0a695d92df9215 *man/AnnoVolcanoPlot.Rd
50ebbf24906e84ecf716fb99260b0499 *man/AnnotateGenes.10x.Rd
51553e78297df19c9f133f3a8ba90813 *man/AnnotateSJ.10x.Rd
377818cab4472e7555ebfd8ccec35cea *man/AssignModality.Rd
49e2601d30cd6bca957ada16e0be0812 *man/BioPathways.10x.Rd
17ecee21ec24b867f0bd9f525b47bffe *man/BioPathways.Plot.10x.Rd
57070d986122dec933dd40218679019f *man/BioPathways.Plot.Rd
3428fa952f91687b0d659b17771c8eb4 *man/BioPathways.Rd
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4c36a3889d99bae73ec098d5451f416d *man/CheckAlignment.Exp.Rd
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d6743f5d3dd2d53d6c96f9c755981cfc *man/CheckAlignment.PSI.Rd
ed4ba661a86657eef93d91503cd5257e *man/CheckAlignment.Rd
36e798e1cfdbfeda2bf5ae29d6c92a08 *man/CheckAlignment.SJ.Rd
59010240485f314f7986fd57f57becda *man/CompareExpr.Rd
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3b5dc669e283a763b4766a40fb79bf2d *man/CompareValues.Exp.Spliced.Rd
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9f4e87c227f5fc32874c2baa7e40c42b *man/CompareValues.Rd
d0b1bb47f48efc8bbae071e1ec75b98f *man/CompareValues.SJ.10x.Rd
a1f362655dd688ffff8eb38a7535a33e *man/ComputePSI.A3SS.Rd
eac3284c30fa4a8208368121c10108ef *man/ComputePSI.A5SS.Rd
89f90136ce1f7d13262e4222efd05c4a *man/ComputePSI.AFE.Rd
6e911e768bfbe8c14220b0fee8368995 *man/ComputePSI.ALE.Rd
e44b81711a73ac8f4830a12539da949f *man/ComputePSI.MXE.Rd
441a5c90e84c076c312c3f2db803e1d5 *man/ComputePSI.RI.Rd
51e69bad8c1e81b1d2ee9c80f8e10eef *man/ComputePSI.Rd
5a639b6a03ec4f98b71cdc9c8b651ae2 *man/ComputePSI.SE.Rd
6a1085c5d8da9b21268fda573e287263 *man/CountEvents.Rd
f2dc584e287cd21d932fed06abf061bc *man/CreateMarvelObject.10x.Rd
66950176843a2dfa558b7f56be323fc6 *man/CreateMarvelObject.Rd
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a3967660acda16d6c56790dea1684eaf *man/DetectEvents.ALE.Rd
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7c11a61b29b2ac2d636a448df95c14e0 *man/ParseGTF.Rd
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6daf330716eb70017363bd35d0a1e687 *man/adhocGene.TabulateExpression.Gene.10x.Rd
a24590609a54c0ae8c5a3b05980ac069 *man/adhocGene.TabulateExpression.PSI.10x.Rd
bae58da71b760313754f7aedaadbac40 *vignettes/MARVEL.Rmd
