| biomod2-package | Species Distribution Modeling within an Ensemble Forecasting framework |
| BIOMOD_FormatingData | Initialise the datasets for usage in 'biomod2' |
| BIOMOD_ModelingOptions | Configure the modeling options for each selected model |
| BIOMOD_Modeling | Run a range of species distribution models |
| BIOMOD_EnsembleModeling | Create and evaluate an ensemble set of models and predictions |
| BIOMOD_Projection | Project the calibrated models within 'biomod2' into new space or time |
| BIOMOD_EnsembleForecasting | Ensemble projections of species over space and time |
| BIOMOD_ConvertOldRun | Convert objects and outputs from BIOMOD.xx into biomod2.xx objects and outputs |
| BIOMOD_LoadModels | Load models built within BIOMOD_Modeling function |
| BIOMOD_RangeSize | Analysis of the range size changes |
| sre | Surface Range Envelope |
| Print_Default_ModelingOptions | Get default values of BIOMOD inner models' options |
| level.plot | Plot 2-dimensional data for visualizing distribution of species or environment |
| multiple.plot | Plot and compare prediction maps within BIOMOD |
| response.plot | Analysis of the response curves of a model within Biomod |
| response.plot2 | Analysis of the 2D or 3D response curves of a model within biomod2 |
| BinaryTransformation | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
| FilteringTransformation | Convert species' probability of occurrence into binary presence-absence data using a predefined threshold |
| makeFormula | Standardized formula maker |
| CustomIndexMaker | Replace default package Index help file by a custom one. |
| Find.Optim.Stat | Find the threshold driving to the best evaluation score |
| calculate.stat | Calculate evaluation metrics based on a misclassification table |
| getStatOptimValue | get the optimal score of evaluation statistical metrics |
| SampleMat2 | Sample binary vector |
| DF_to_ARRAY | Convert a biomod2 data.frame into array |
| getEMalgos | BIOMOD.EnsembleModeling.out getters |
| getEMalgos-method | BIOMOD.EnsembleModeling.out getters |
| getEMbuiltModels | BIOMOD.EnsembleModeling.out getters |
| getEMbuiltModels-method | BIOMOD.EnsembleModeling.out getters |
| getEMeval | BIOMOD.EnsembleModeling.out getters |
| getEMeval-method | BIOMOD.EnsembleModeling.out getters |
| getEMkeptModels | BIOMOD.EnsembleModeling.out getters |
| getEMkeptModels-method | BIOMOD.EnsembleModeling.out getters |
| getModelsBuiltModels | BIOMOD.models.out getters |
| getModelsBuiltModels-method | BIOMOD.models.out getters |
| getModelsEvaluations | BIOMOD.models.out getters |
| getModelsEvaluations-method | BIOMOD.models.out getters |
| getModelsInputData | BIOMOD.models.out getters |
| getModelsInputData-method | BIOMOD.models.out getters |
| getModelsOptions | BIOMOD.models.out getters |
| getModelsOptions-method | BIOMOD.models.out getters |
| getModelsPrediction | BIOMOD.models.out getters |
| getModelsPrediction-method | BIOMOD.models.out getters |
| getModelsPredictionEval | BIOMOD.models.out getters |
| getModelsPredictionEval-method | BIOMOD.models.out getters |
| getModelsVarImport | BIOMOD.models.out getters |
| getModelsVarImport-method | BIOMOD.models.out getters |
| getProjection | BIOMOD.projection.out getters |
| getProjection-method | BIOMOD.projection.out getters |
| BIOMOD.EnsembleModeling.out | BIOMOD_EnsembleModeling() outputs objects class |
| BIOMOD.EnsembleModeling.out-class | BIOMOD_EnsembleModeling() outputs objects class |
| BIOMOD.formated.data | BIOMOD_FormatingData() outputs objects class |
| BIOMOD.formated.data-class | BIOMOD_FormatingData() outputs objects class |
| BIOMOD.formated.data-method | BIOMOD_FormatingData() outputs objects class |
| BIOMOD.formated.data.PA | BIOMOD_FormatingData() outputs objects class |
| BIOMOD.formated.data.PA-class | BIOMOD_FormatingData() outputs objects class |
| BIOMOD.Model.Options-class | BIOMOD_ModelingOptions() outputs objects class |
| BIOMOD.models.out-class | BIOMOD_modelling() outputs objects class |
| BIOMOD.projection.out | BIOMOD_Projection() outputs objects class |
| BIOMOD.projection.out-class | BIOMOD_Projection() outputs objects class |
| BIOMOD.stored.array | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.array-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.data | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.data-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.files | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.files-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.formated.data | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.formated.data-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.models.options | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.models.options-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.models.out | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.models.out-class | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.raster.stack | BIOMOD.stored.xxx objects class |
| BIOMOD.stored.raster.stack-class | BIOMOD.stored.xxx objects class |
| maxent_model-class | biomod2 MAXENT models objects class and functions |