Benchmark for Publication Bias Correction Methods

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Documentation for package ‘PublicationBiasBenchmark’ version 0.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bias	Performance Measures and Monte Carlo Standard Errors
bias_mcse	Performance Measures and Monte Carlo Standard Errors
compare_measures	Compare method with Multiple Measures for a DGM
compare_single_measure	Compare method with a Single Measure for a DGM
compute_measures	Compute Multiple Performance measures for a DGM
compute_single_measure	Compute Performance Measures
coverage	Performance Measures and Monte Carlo Standard Errors
coverage_mcse	Performance Measures and Monte Carlo Standard Errors
create_empty_result	Create standardized empty method result for convergence failures
dgm	DGM Method
dgm.Alinaghi2018	Alinaghi and Reed (2018) Data-Generating Mechanism
dgm.Bom2019	Bom and Rachinger (2019) Data-Generating Mechanism
dgm.Carter2019	Carter et al. (2019) Data-Generating Mechanism
dgm.default	Default DGM handler
dgm.no_bias	Normal Unbiased Data-Generating Mechanism
dgm.Stanley2017	Stanley, Doucouliagos, and Ioannidis (2017) Data-Generating Mechanism
dgm_conditions	Return Pre-specified DGM Settings
download_dgm	Download Datasets/Results/Measures of a DGM
download_dgm_datasets	Download Datasets/Results/Measures of a DGM
download_dgm_measures	Download Datasets/Results/Measures of a DGM
download_dgm_results	Download Datasets/Results/Measures of a DGM
empirical_se	Performance Measures and Monte Carlo Standard Errors
empirical_se_mcse	Performance Measures and Monte Carlo Standard Errors
empirical_variance	Performance Measures and Monte Carlo Standard Errors
empirical_variance_mcse	Performance Measures and Monte Carlo Standard Errors
get_dgm_condition	Return Pre-specified DGM Settings
get_method_extra_columns	Method Extra Columns
get_method_setting	Return Pre-specified Method Settings
interval_score	Performance Measures and Monte Carlo Standard Errors
interval_score_mcse	Performance Measures and Monte Carlo Standard Errors
mean_ci_width	Performance Measures and Monte Carlo Standard Errors
mean_ci_width_mcse	Performance Measures and Monte Carlo Standard Errors
mean_generic_statistic	Performance Measures and Monte Carlo Standard Errors
mean_generic_statistic_mcse	Performance Measures and Monte Carlo Standard Errors
measure	Get performance measure function
measures	Performance Measures and Monte Carlo Standard Errors
measure_mcse	Get performance measure MCSE function
method	Method Method
method.AK	AK Method
method.default	Default method handler
method.EK	Endogenous Kink Method
method.FMA	Fixed Effects Meta-Analysis Method
method.mean	Mean Method
method.pcurve	pcurve (P-Curve) Method
method.PEESE	PEESE (Precision-Effect Estimate with Standard Errors) Method
method.PET	PET (Precision-Effect Test) Method
method.PETPEESE	PET-PEESE (Precision-Effect Test and Precision-Effect Estimate with Standard Errors) Method
method.puniform	puniform (P-Uniform) Method
method.RMA	Random Effects Meta-Analysis Method
method.RoBMA	Robust Bayesian Meta-Analysis (RoBMA) Method
method.SM	SM (Selection Models) Method
method.trimfill	Trim-and-Fill Meta-Analysis Method
method.WAAPWLS	WAAPWLS (Weighted Average of Adequately Powered Studies) Method
method.WILS	Weighted and Iterated Least Squares (WILS) Method
method.WLS	WLS (Weighted Least Squares) Method
method_extra_columns	Method Extra Columns
method_extra_columns.default	Method Extra Columns
method_settings	Return Pre-specified Method Settings
mse	Performance Measures and Monte Carlo Standard Errors
mse_mcse	Performance Measures and Monte Carlo Standard Errors
negative_likelihood_ratio	Performance Measures and Monte Carlo Standard Errors
negative_likelihood_ratio_mcse	Performance Measures and Monte Carlo Standard Errors
positive_likelihood_ratio	Performance Measures and Monte Carlo Standard Errors
positive_likelihood_ratio_mcse	Performance Measures and Monte Carlo Standard Errors
power	Performance Measures and Monte Carlo Standard Errors
power_mcse	Performance Measures and Monte Carlo Standard Errors
PublicationBiasBenchmark.get_option	Options for the PublicationBiasBenchmark package
PublicationBiasBenchmark.options	Options for the PublicationBiasBenchmark package
PublicationBiasBenchmark_options	Options for the PublicationBiasBenchmark package
relative_bias	Performance Measures and Monte Carlo Standard Errors
relative_bias_mcse	Performance Measures and Monte Carlo Standard Errors
retrieve_dgm_dataset	Retrieve a Pre-Simulated Condition and Repetition From a DGM
retrieve_dgm_measures	Retrieve Pre-Computed Performance measures for a DGM
retrieve_dgm_results	Retrieve a Pre-Computed Results of a Method Applied to DGM
rmse	Performance Measures and Monte Carlo Standard Errors
rmse_mcse	Performance Measures and Monte Carlo Standard Errors
run_method	Generic method function for publication bias correction
simulate_dgm	Simulate From Data-Generating Mechanism
validate_dgm_setting	Validate DGM Settings