| A | TF-gene regulation strength matrix |
| alpha | Inverse-gamma distribution hyper-parameter alpha |
| A_old | TF-gene regulation strength matrix sampled from the previous round |
| A_sampling | Regulation Strength Sampling Function |
| baseline_sampling | Gene Baseline Expression Sampling Function |
| base_line | Gene baseline expression |
| base_line_old | Gene baseline expression sampled from the previous round. |
| beta | Inverse-gamma distribution hyper-parameter beta |
| BICORN | BICORN Algorithm Function |
| Binding_genes | Genes in the prior binding network |
| Binding_matrix | Prior TF-gene binding network |
| Binding_TFs | TFs in the prior binding network |
| C | TF-gene binding network |
| C_old | TF-gene binding network sampled from the previous round |
| C_prior | Prior TF-gene binding network |
| C_sampling_cluster | cis-Regulatory Module Sampling Function |
| data_integration | Data Initialization for BICORN |
| Exp_data | Gene expression data |
| Exp_genes | Genes in the expression data |
| sigmanoise_sampling | Fitting Residule Variance Sampling Function |
| sigma_A | Regulation strength variance |
| sigma_baseline | Variance of baseline gene expression. |
| sigma_noise | Variance of gene expression fitting residuals. |
| sigma_X | Transcription factor activity variance |
| X | Transcription factr activity matrix |
| X_old | Transcription factr activity matrix sampled from the previous round |
| X_sampling | Transcription Factor Activity Sampling Function |
| Y | Gene expression data used for module inference |