Bayesian Inference of Binary, Count and Continuous Data in
Toxicology
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Documentation for package ‘morseDR’ version 0.1.2
Help Pages
| binaryData | Creates a data set for binary data analysis |
| binaryData.data.frame | Creates a data set for binary data analysis |
| binaryDataCheck | Checking object structure for analysis |
| cadmium1 | Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with Daphnia |
| cadmium2 | Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with snails |
| cadmium_daphnia | Continuous response of toxicity test of cadmium on Daphnia |
| CheckData | Checking object structure for analysis |
| chlordan | Reproduction and survival data sets of chronic laboratory toxicity tests of chlordan with Daphnia |
| chlordan_daphnia | Continuous response of toxicity test of chlordan on Daphnia |
| continuousData | Creates a data set for binary data analysis |
| continuousData.data.frame | Creates a data set for binary data analysis |
| continuousDataCheck | Checking object structure for analysis |
| copper | Reproduction and survival data sets of chronic laboratory toxicity tests of copper on Daphnia |
| copper_daphnia | Continuous response of toxicity test of copper on Daphnia |
| countData | Creates a data set for binary data analysis |
| countData.data.frame | Creates a data set for binary data analysis |
| countDataCheck | Checking object structure for analysis |
| dichromate | Survival data set of chronic laboratory toxicity tests of dichromate with Daphnia |
| DoseResponse | Prepare data for Dose-Reponse |
| doseResponse | Prepare data for Dose-Reponse |
| doseResponse.BinaryData | Prepare data for Dose-Reponse |
| doseResponse.ContinuousData | Prepare data for Dose-Reponse |
| doseResponse.CountData | Prepare data for Dose-Reponse |
| extract_sim | Extract simulation from the fit |
| fit | Fits a Bayesian concentration-response model for target-time |
| fit.BinaryData | Fits a Bayesian concentration-response model for target-time |
| fit.ContinuousData | Fits a Bayesian concentration-response model for target-time |
| fit.CountData | Fits a Bayesian concentration-response model for target-time |
| FitTT | Fits a Bayesian concentration-response model for target-time |
| ModelData | Creates a data set for binary data analysis |
| modelData | Creates a data set for binary data analysis |
| modelData.data.frame | Creates a data set for binary data analysis |
| plant01 | Continuous response of toxicity test on plants |
| plant02 | Continuous response of toxicity test on plants |
| plant03 | Continuous response of toxicity test on plants |
| plant04 | Continuous response of toxicity test on plants |
| plant05 | Continuous response of toxicity test on plants |
| plant06 | Continuous response of toxicity test on plants |
| plant07 | Continuous response of toxicity test on plants |
| plant08 | Continuous response of toxicity test on plants |
| plant09 | Continuous response of toxicity test on plants |
| plant10 | Continuous response of toxicity test on plants |
| plot.BinaryData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'. |
| plot.BinaryDoseResponse | Plot dose-response from 'DoseResponse' objects |
| plot.BinaryFitTT | Plotting method for 'FitTT' objects. |
| plot.ContinuousData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'. |
| plot.ContinuousDoseResponse | Plot dose-response from 'DoseResponse' objects |
| plot.ContinuousFitTT | Plotting method for 'FitTT' objects. |
| plot.CountData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'. |
| plot.CountDoseResponse | Plot dose-response from 'DoseResponse' objects |
| plot.CountFitTT | Plotting method for 'FitTT' objects. |
| plot.DoseResponse | Plot dose-response from 'DoseResponse' objects |
| plot.PPC | Plot the Posterior Predictive Chack on an object 'PPC' |
| plot.PriorPosterior | Return Prior and Posterior density of parameters of 'FitTT' object |
| plot.XCX | Plot an object 'XCX' |
| PlotData | Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'. |
| PlotDoseResponse | Plot dose-response from 'DoseResponse' objects |
| PlotFitTT | Plotting method for 'FitTT' objects. |
| PlotPPC | Plot the Posterior Predictive Chack on an object 'PPC' |
| PlotRiskMeasure | Plot an object 'XCX' |
| posterior | Return Prior and Posterior density of parameters of 'FitTT' object |
| posterior.FitTT | Return Prior and Posterior density of parameters of 'FitTT' object |
| PPC | Posterior Predictive Check data.frame for 'FitTT' objects |
| ppc | Posterior Predictive Check data.frame for 'FitTT' objects |
| ppc.BinaryFitTT | Posterior Predictive Check data.frame for 'FitTT' objects |
| ppc.ContinuousFitTT | Posterior Predictive Check data.frame for 'FitTT' objects |
| ppc.CountFitTT | Posterior Predictive Check data.frame for 'FitTT' objects |
| Predict | Prediction base on 'FitTT' |
| predict | Prediction base on 'FitTT' |
| predict.BinaryFitTT | Prediction base on 'FitTT' |
| predict.ContinuousFitTT | Prediction base on 'FitTT' |
| predict.CountFitTT | Prediction base on 'FitTT' |
| PriorPosterior | Return Prior and Posterior density of parameters of 'FitTT' object |
| priorPosterior | Return Prior and Posterior density of parameters of 'FitTT' object |
| priorPosterior.BinaryFitTT | Return Prior and Posterior density of parameters of 'FitTT' object |
| priorPosterior.ContinuousFitTT | Return Prior and Posterior density of parameters of 'FitTT' object |
| priorPosterior.CountFitTT | Return Prior and Posterior density of parameters of 'FitTT' object |
| propiconazole | Survival data set of chronic laboratory toxicity tests of propiconazole with Gammarus pulex |
| reco27 | Continuous response of toxicity test |
| RiskMeasure | Predict X% Concentration at the target time (default). |
| subst01_lymnaea | Continuous response of toxicity test on snails |
| Summary | Summary of 'FitTT' object |
| summary.BinaryFitTT | Summary of 'FitTT' object |
| summary.ContinuousFitTT | Summary of 'FitTT' object |
| summary.CountFitTT | Summary of 'FitTT' object |
| summary.PPC | Summary of 'FitTT' object |
| xcx | Predict X% Concentration at the target time (default). |
| xcx.FitTT | Predict X% Concentration at the target time (default). |
| zinc | Reproduction and survival data sets of a chronic laboratory toxicity tests of zinc with Daphnia |
| zinc_daphnia | Continuous response of toxicity test of zinc on Daphnia |